Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq243 147 3e-29
seq959 91.5 2e-12
seq130 87.8 3e-11
>seq243
Length=163308
Score = 147 bits (162), Expect = 3e-29
Identities = 175/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||| |||||||| |||||||| || || || || || ||| ||||||| |||||| |||
Sbjct 58152 GTATTTGGTGACTGCCTTGGTGCCTTCAGACACAGCATGCTTGGCCAGCTCGCCGGGCAG 58211
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590
||| || || || | ||||||||||||||| | ||| || |||||| || ||
Sbjct 58212 GATGAGCCGGACAGAGGTCTGGATCTCGCGCGATGAGATGGTCGACTTCTTGTT-GTACG 58270
Query 1485591 -CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||| | ||||| || ||| ||| || | |||||||| ||||| |||||||
Sbjct 58271 CCGCCAGCTTGGATGCCTCAGTTGCGACGCGCTCAAATATGTCGTTCACAAATGAGTTCA 58330
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
||||||||| | ||||||||| ||| ||| || |||||||||||||| ||
Sbjct 58331 GGATCGACATGGCGCGGTTGGAGATACCCGTGTCAGGATGCACCTGCTTGAGAAC 58385
>seq959
Length=28360
Score = 91.5 bits (100), Expect = 2e-12
Identities = 169/248 (68%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952
||||| ||||| ||| || || || | | ||| || || |||||||||||| | | |
Sbjct 16477 ACGCCAGCCTTCTGATAATCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCCGCCAAC 16418
Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012
||||| |||||| | || ||||||| | ||| | | | | ||||||
Sbjct 16417 GAGATGTTCTCCATGAAGTCAAATGGGTTGGTGGCGTTGTAATACCTGCTGTTGCCGAGC 16358
Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072
| || ||||| ||||| || || || ||||| |||||||||||| || |||||||
Sbjct 16357 GCGAGCAGTAGGCGATCGGCCACAAACTCGATGTATTGGCACATGAGGTTGGAGTTCATG 16298
Query 794073 CCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCG 794132
|| | || || || |||| || || | || ||||| || || || |||||| ||
Sbjct 16297 CCTAGTAGTGCGACAGGCAATGAGTCTGTCACGAACTCCTTTTCAATGGTGACGGCTTCA 16238
Query 794133 ATGATGAT 794140
|||||||
Sbjct 16237 GTGATGAT 16230
>seq130
Length=100130
Score = 87.8 bits (96), Expect = 3e-11
Identities = 240/366 (66%), Gaps = 10/366 (3%)
Strand=Plus/Plus
Query 2019038 GCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGC 2019097
||| |||| ||||| || ||| |||| ||||| || || ||| | || | ||
Sbjct 44880 GCCTGGCATCGGCAAAACGACGTCCATCCTCTGCCTTGCCCGACAGCTTCTCGGGGATGC 44939
Query 2019098 CGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCG 2019157
| | ||||| ||||| ||| | ||||| || ||||| || || | || || ||| |
Sbjct 44940 GTACAAGGAGGCAGTGCTTGAATTGAATGCATCGGACGAACGAGGTATAGATGTGGTGAG 44999
Query 2019158 TAGAATCATCAAGCATCACGCTTCG---AAAAGAA--TCGACCTGCCGCCCGGCCGCCAC 2019212
| | || || | |||| | ||||||| || ||||||| || | |||
Sbjct 45000 GAACAGGATAAA-----AGGCTTTGCCCAAAAGAAGGTCACATTGCCGCCTGGAAGACAC 45054
Query 2019213 AAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGA 2019272
||| | | || | ||||||||||| || | || || | || || || ||||||||
Sbjct 45055 AAGATTGTGATATTGGATGAGGCCGATAGCATGACATCTGGCGCTCAACAAGCCCTCCGC 45114
Query 2019273 TCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCG 2019332
||| ||||||| || | | ||| ||||| ||||| | || ||||||| |||
Sbjct 45115 AGGACAATGGAAATATATGCGAGCACAACGCGCTTTGCATTTGCGTGCAACATGTCCAAC 45174
Query 2019333 ATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGAC 2019392
| | ||||||| |||| ||| || || ||||| | || | | | ||||| || ||
Sbjct 45175 AAGATCATCGAGCCCCTGCAGTCTCGATGTGCCATTCTTCGGTATTCACGCCTTACAGAT 45234
Query 2019393 GCCCAG 2019398
| ||||
Sbjct 45235 GGCCAG 45240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916067371613837
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |