Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq243 147 3e-29 seq959 91.5 2e-12 seq130 87.8 3e-11 >seq243 Length=163308 Score = 147 bits (162), Expect = 3e-29 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||| |||||||| |||||||| || || || || || ||| ||||||| |||||| ||| Sbjct 58152 GTATTTGGTGACTGCCTTGGTGCCTTCAGACACAGCATGCTTGGCCAGCTCGCCGGGCAG 58211 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || || || | ||||||||||||||| | ||| || |||||| || || Sbjct 58212 GATGAGCCGGACAGAGGTCTGGATCTCGCGCGATGAGATGGTCGACTTCTTGTT-GTACG 58270 Query 1485591 -CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| | ||||| || ||| ||| || | |||||||| ||||| ||||||| Sbjct 58271 CCGCCAGCTTGGATGCCTCAGTTGCGACGCGCTCAAATATGTCGTTCACAAATGAGTTCA 58330 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| | ||||||||| ||| ||| || |||||||||||||| || Sbjct 58331 GGATCGACATGGCGCGGTTGGAGATACCCGTGTCAGGATGCACCTGCTTGAGAAC 58385 >seq959 Length=28360 Score = 91.5 bits (100), Expect = 2e-12 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| ||| || || || | | ||| || || |||||||||||| | | | Sbjct 16477 ACGCCAGCCTTCTGATAATCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCCGCCAAC 16418 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012 ||||| |||||| | || ||||||| | ||| | | | | |||||| Sbjct 16417 GAGATGTTCTCCATGAAGTCAAATGGGTTGGTGGCGTTGTAATACCTGCTGTTGCCGAGC 16358 Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072 | || ||||| ||||| || || || ||||| |||||||||||| || ||||||| Sbjct 16357 GCGAGCAGTAGGCGATCGGCCACAAACTCGATGTATTGGCACATGAGGTTGGAGTTCATG 16298 Query 794073 CCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCG 794132 || | || || || |||| || || | || ||||| || || || |||||| || Sbjct 16297 CCTAGTAGTGCGACAGGCAATGAGTCTGTCACGAACTCCTTTTCAATGGTGACGGCTTCA 16238 Query 794133 ATGATGAT 794140 ||||||| Sbjct 16237 GTGATGAT 16230 >seq130 Length=100130 Score = 87.8 bits (96), Expect = 3e-11 Identities = 240/366 (66%), Gaps = 10/366 (3%) Strand=Plus/Plus Query 2019038 GCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGC 2019097 ||| |||| ||||| || ||| |||| ||||| || || ||| | || | || Sbjct 44880 GCCTGGCATCGGCAAAACGACGTCCATCCTCTGCCTTGCCCGACAGCTTCTCGGGGATGC 44939 Query 2019098 CGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCG 2019157 | | ||||| ||||| ||| | ||||| || ||||| || || | || || ||| | Sbjct 44940 GTACAAGGAGGCAGTGCTTGAATTGAATGCATCGGACGAACGAGGTATAGATGTGGTGAG 44999 Query 2019158 TAGAATCATCAAGCATCACGCTTCG---AAAAGAA--TCGACCTGCCGCCCGGCCGCCAC 2019212 | | || || | |||| | ||||||| || ||||||| || | ||| Sbjct 45000 GAACAGGATAAA-----AGGCTTTGCCCAAAAGAAGGTCACATTGCCGCCTGGAAGACAC 45054 Query 2019213 AAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGA 2019272 ||| | | || | ||||||||||| || | || || | || || || |||||||| Sbjct 45055 AAGATTGTGATATTGGATGAGGCCGATAGCATGACATCTGGCGCTCAACAAGCCCTCCGC 45114 Query 2019273 TCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCG 2019332 ||| ||||||| || | | ||| ||||| ||||| | || ||||||| ||| Sbjct 45115 AGGACAATGGAAATATATGCGAGCACAACGCGCTTTGCATTTGCGTGCAACATGTCCAAC 45174 Query 2019333 ATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGAC 2019392 | | ||||||| |||| ||| || || ||||| | || | | | ||||| || || Sbjct 45175 AAGATCATCGAGCCCCTGCAGTCTCGATGTGCCATTCTTCGGTATTCACGCCTTACAGAT 45234 Query 2019393 GCCCAG 2019398 | |||| Sbjct 45235 GGCCAG 45240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916067371613837