Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq990 132 3e-26
seq928 107 1e-18
seq1047 104 2e-17
>seq990
Length=11377
Score = 132 bits (146), Expect = 3e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||| ||| | || || |||||||||||||| ||||| || | | | | ||||
Sbjct 10770 CAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCCATC 10711
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||||||||| ||||||||||| |||| ||| ||||| |||| | ||||| |||||
Sbjct 10710 TTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTTGTC 10651
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || || ||| |||||| ||| | | ||||| || | || |||||
Sbjct 10650 TTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAGAGTGATGGT 10591
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || ||||| || || |||||||| |||||
Sbjct 10590 CTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558
Score = 105 bits (116), Expect = 4e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| ||||| | ||| || || || |||||||| ||||| || ||| |||| ||||
Sbjct 10542 CAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATC 10483
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || || || || ||||| |||| || |||||||| | || | ||||| || ||
Sbjct 10482 CTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATC 10423
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| ||||| ||| ||| | || | || | ||| || |||| || |||||
Sbjct 10422 TTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGT 10363
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || || ||||| ||||||||||||||
Sbjct 10362 TTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330
Score = 105 bits (116), Expect = 4e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| || | |||||| ||||||||||| || ||||| || | | | | ||
Sbjct 10998 CAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGACAACGTCCTACCGTC 10939
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| |||||| || |||||||| | || ||||||||| | || | |||||||||||
Sbjct 10938 TTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTGTC 10879
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || || ||| | |||| || | | ||||| || | ||| |||||
Sbjct 10878 TTGAATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATTCGACTTCTAGGGTGATGGT 10819
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || ||||| || || || |||||||||||
Sbjct 10818 CTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786
Score = 102 bits (112), Expect = 5e-17
Identities = 141/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| || || |||| ||||||||||| |||||||| ||||| || |||| ||||
Sbjct 10314 CAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATC 10255
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| |||||||| |||||||||||||| |||||||| ||| | || | || ||||||||
Sbjct 10254 TTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTC 10195
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| || ||||||| || | |||||| || | || |
Sbjct 10194 TTGAATCTTGCTCTTGAC--AT--TATCGATCGTGTCCGACGACTCGACCTCGAGAGTGA 10139
Query 34941 TGGTCTTTCCCGTGA 34955
||||||| || ||||
Sbjct 10138 TGGTCTTGCCGGTGA 10124
>seq928
Length=40960
Score = 107 bits (118), Expect = 1e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || | ||||| |||| |||| ||||| || |||||||
Sbjct 465 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGCCCATCCTCCAACTGCTTGCCAGCGAAGA 406
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| |||||||| || | || | ||||||||||| | || || || ||
Sbjct 405 TCAGACGTTGCTGATCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGT 346
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
|||||| || | | |||||| || | || |||||||| |||||||||||||| || |
Sbjct 345 CTATCGTGTCGCTAGACTCGACCTCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 286
Query 34968 AG 34969
||
Sbjct 285 AG 284
>seq1047
Length=44052
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809
||| || | ||| | || ||||| |||| ||||||||||||||||| ||||| || ||
Sbjct 5375 TCCACCACGCAAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGA 5434
Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
||| |||| |||| || || ||||| ||||| |||||||| || |||||||| | ||
Sbjct 5435 GAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGG 5494
Query 34870 CACCCCCTCCTTGTC 34884
| ||||| |||||
Sbjct 5495 GATACCCTCTTTGTC 5509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325686119531777
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |