Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq990 120 2e-22
seq1047 96.9 3e-15
>seq990
Length=11377
Score = 120 bits (132), Expect = 2e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||| || | || || || ||||||||||||||| || || | | ||||||
Sbjct 10545 ACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCC 10486
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || ||||||||||| | ||||| | ||||| ||||| || |||||||||||
Sbjct 10485 ATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTT 10426
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| | ||| ||| || | || | ||||| || || || ||||| || ||
Sbjct 10425 ATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGAT 10366
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||| || | || || ||||| ||||||||
Sbjct 10365 GGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330
Score = 105 bits (116), Expect = 5e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||| ||||| || | || ||| || |||||||| || || | | || |
Sbjct 10773 ACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCC 10714
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || ||||| ||||| || | || | |||||| || || |||||||||||||||||
Sbjct 10713 ATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTT 10654
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| || | || || | |||| || ||| ||| ||||| ||||| |
Sbjct 10653 GTCTTG-AATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAGAGTGA 10595
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || ||||| || | ||||||||||| || |||||
Sbjct 10594 TGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
||||| || | |||||||||| || ||||||||||| || || | ||||| |
Sbjct 10316 CGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCA 10257
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| |||||||| ||||| || | |||| | ||||||||| || || ||||| || |||
Sbjct 10256 TCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTG 10197
Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| ||| || | |||||| | || | ||||| || || || || ||||| ||
Sbjct 10196 TCTTG-AATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAGAGTGAT 10138
Query 29751 AGTTTTGCCAGT 29762
|| ||||| ||
Sbjct 10137 GGTCTTGCCGGT 10126
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615
||| || || | || ||||||||||||||| || ||| ||| || ||||| || || ||
Sbjct 11016 TTGACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTC 10957
Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675
| | || | | || || | ||| ||||| || | || ||||| ||||| || ||
Sbjct 10956 TGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGG 10897
Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTT 29734
|| || ||||| |||||||| ||| || | || || | || | || || ||
Sbjct 10896 AGGTATGCCCTCCTTGTCTTG-AATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATT 10838
Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| ||||| || || || || ||||| || | ||||| || || ||||||||
Sbjct 10837 CGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786
>seq1047
Length=44052
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||| || | ||| || || |||| |||||| ||| || || ||||| |||||||| |
Sbjct 5375 TCCACCACGCAAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGA 5434
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| ||||||| ||| ||||| || ||||| ||| | |||| | ||||| ||||| ||
Sbjct 5435 GAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGG 5494
Query 29679 AATACCCTCTTTGTCT 29694
|||||||||||||||
Sbjct 5495 GATACCCTCTTTGTCT 5510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385211298552303
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |