Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq990 120 2e-22 seq1047 96.9 3e-15 >seq990 Length=11377 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| || | || || || ||||||||||||||| || || | | |||||| Sbjct 10545 ACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCC 10486 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||||||||| | ||||| | ||||| ||||| || ||||||||||| Sbjct 10485 ATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTT 10426 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||| ||| || | || | ||||| || || || ||||| || || Sbjct 10425 ATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGAT 10366 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | || || ||||| |||||||| Sbjct 10365 GGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 Score = 105 bits (116), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| ||||| || | || ||| || |||||||| || || | | || | Sbjct 10773 ACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCC 10714 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| ||||| || | || | |||||| || || ||||||||||||||||| Sbjct 10713 ATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTT 10654 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | || || | |||| || ||| ||| ||||| ||||| | Sbjct 10653 GTCTTG-AATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAGAGTGA 10595 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || | ||||||||||| || ||||| Sbjct 10594 TGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | |||||||||| || ||||||||||| || || | ||||| | Sbjct 10316 CGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCA 10257 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||| ||||| || | |||| | ||||||||| || || ||||| || ||| Sbjct 10256 TCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTG 10197 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | |||||| | || | ||||| || || || || ||||| || Sbjct 10196 TCTTG-AATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAGAGTGAT 10138 Query 29751 AGTTTTGCCAGT 29762 || ||||| || Sbjct 10137 GGTCTTGCCGGT 10126 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||| || || | || ||||||||||||||| || ||| ||| || ||||| || || || Sbjct 11016 TTGACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTC 10957 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | | || | | || || | ||| ||||| || | || ||||| ||||| || || Sbjct 10956 TGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGG 10897 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 || || ||||| |||||||| ||| || | || || | || | || || || Sbjct 10896 AGGTATGCCCTCCTTGTCTTG-AATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATT 10838 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || || || ||||| || | ||||| || || |||||||| Sbjct 10837 CGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 >seq1047 Length=44052 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | ||| || || |||| |||||| ||| || || ||||| |||||||| | Sbjct 5375 TCCACCACGCAAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGA 5434 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||||| ||| ||||| || ||||| ||| | |||| | ||||| ||||| || Sbjct 5435 GAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGG 5494 Query 29679 AATACCCTCTTTGTCT 29694 ||||||||||||||| Sbjct 5495 GATACCCTCTTTGTCT 5510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211298552303