Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq32 95.1 9e-14 seq1399 93.3 3e-13 >seq32 Length=30463 Score = 95.1 bits (104), Expect = 9e-14 Identities = 411/643 (64%), Gaps = 28/643 (4%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || || || |||||||| ||||| | || | || | ||| | | | || | |||| Sbjct 5882 CGGTTGTCGAAGTCTTCACCACCCAAGTGCGTGTCACCGGCCGTGGATTTGACCTCGAAA 5941 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | || || || | | | | | ||||| || |||||||||| || ||||| Sbjct 5942 ATGCCCTCCTCGATGGTAAGTAAGGACACATCGAAAGTGCCACCACCCAAGTCGAAAATC 6001 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | ||| ||| || || || || || || || || |||| || || || || Sbjct 6002 AATACGTTCCGCTCGCCTTCAACCTTCTTGTCGAGGCCGTAGGCAATGGCTGCGGCGGTC 6061 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || || ||||| | ||| ||||| | || || || || |||||||| || ||| Sbjct 6062 GGCTCGTTGATAATACGCAACACATTCAAGCCGGCGATGAGACCAGCATCTTTGGTTGCT 6121 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTT 282486 |||||||| || ||||| |||||||| || ||||| || || |||| |||| || Sbjct 6122 TGTCTTTGAGAGTCGTTGAAATATGCCGGCACAGTGATGACAGCAT-TGTTGACAGTGCC 6180 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 || | || | || |||| | ||| || | | | ||| || || || | ||| Sbjct 6181 GCCGAGGTATGATTCAGCAGTTTCTCGCATCTTGGTGAGCACCATGGAAGAGATCTCTTC 6240 Query 282547 TGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAA---AATATGGTTTATT--- 282600 ||| || || |||| || || | | ||| || | ||| | ||| Sbjct 6241 TGG--------GC-TGAATTCTTTCTGCTCT--CCCTTGAACTCGACTTGGATGATTGGC 6289 Query 282601 ---ACCAAC--ATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTT--T 282653 || | | || ||||| || || | | |||||||||| ||| ||||| Sbjct 6290 TTGCCCTGCTTCTCGATTACTTTGAAAGGGAAGTGCTTCATATCTGCTTG--CACTTCAG 6347 Query 282654 GGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAA 282713 |||| || || | | || || | ||| || ||||| |||| || || ||| || | Sbjct 6348 GGTCGTTGAATTTCCGTCCGATGAGTCGCTTCGCATCGAAAACTGTGTTCTGTGGGTTCA 6407 Query 282714 CTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACAT 282773 ||| | || | || || ||||| ||||||||| | || || ||||| |||| ||| Sbjct 6408 TTGCGACCTGGTTCTTCGCGGCATCACCAATCAGACGCTCAGTGTCTGTGAATGCGACAA 6467 Query 282774 ATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 282816 | || || |||||||| || ||||| || || ||||| || || Sbjct 6468 ACGACGGCGTTGTGCGGTTGCCTTGGTCGTTTGCAATGATCTC 6510 >seq1399 Length=32242 Score = 93.3 bits (102), Expect = 3e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 282356 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 282415 || ||||| || ||||| || | |||| | || ||||| |||||||| | |||||| Sbjct 11377 GCGGCAGCTGTCGGTTCGTTGACGATTCGTAGCACGTTAAGCCCAGCAATAGTACCTGCA 11436 Query 282416 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCT 282475 || || || || | ||||| ||||| |||||||| ||||| |||| ||||||| | Sbjct 11437 TCCTTTGTCGCAGCACGTTGTGCGTCGTTGAAATATGCCGGAACGGTAACGACGGCATTT 11496 Query 282476 GTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGAT 282535 || || | | || | ||| || ||| || ||||| || | ||||||||||| Sbjct 11497 GTGACCTTCTCGCCTAGATATGCCTCTGCAACTTCCTTCATCTTGCCCAAAATCATTGAA 11556 Query 282536 GAAATTTGTTCTGG 282549 |||| || ||| || Sbjct 11557 GAAACTTCTTCGGG 11570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740547771812358