Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1295 221 1e-52 seq990 111 2e-19 >seq1295 Length=44835 Score = 221 bits (244), Expect = 1e-52 Identities = 1103/1730 (64%), Gaps = 69/1730 (4%) Strand=Plus/Plus Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTTATCTTCATC 148118 ||||| ||||| ||||| |||||||| ||||| | |||| | |||| | || Sbjct 16314 TGGTCGATGAATGCGCCGCGGTCAGCAGCCATCTGCACAATATGACGCTGACTG---ATT 16370 Query 148119 TCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACC 148178 ||||| | |||||||| || |||| | ||| |||||| ||||||||| || Sbjct 16371 TCCCATACAGTCTTGTAAAGGGCTTTGAGGTCATCTGGAATGTTCGGGATGCGCTGAACA 16430 Query 148179 GAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATC 148238 || |||| | |||| || | || ||| | ||| | | || | | |||| Sbjct 16431 GACCCGCCATCTGCAATGATGCGGTTCTTCATGTTGTCTGACCAGAGACCGCGATCGACA 16490 Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 ||||| | | || | | || |||||||| |||||||| || || || || || Sbjct 16491 AGGTCCTTTAGCAACCATGGGTTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTG 16550 Query 148299 TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTT 148358 || | ||| || |||| || || | || ||| ||||| ||||||| |||| Sbjct 16551 TAAATGTTCGAAGTGTACGGCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGAC 16610 Query 148359 GCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC 148418 || || |||||| ||| ||||||| |||||||| | ||| | | | || || | Sbjct 16611 GCTGTTGGCATGGGCGCCACCAGCAATGAGTTGCGGACTCCGTGCTGTGCAATCTTCGCC 16670 Query 148419 TTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGA 148478 || || | ||||||||||||| | || |||||| |||||||||||| ||||| Sbjct 16671 TTGAGTGAATCCCAGTCCCAGAGATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAGT 16730 Query 148479 ATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGT 148538 || ||| | ||| ||| |||| | || || ||| | | |||||||| Sbjct 16731 TCCCCTTTGCTGACAGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGT 16790 Query 148539 TCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGC 148598 |||||| ||||| | ||| |||| ||||| |||||| || || |||| | Sbjct 16791 TCGCAGGAGGCCTCCAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTA----- 16845 Query 148599 GCCGCCGACTCGCTT--------TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAA 148650 |||| || |||| ||| ||||||| || || | || || ||||| | Sbjct 16846 ---GCCGTCTTGCTTCGGGAGAGTCGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCA 16902 Query 148651 GGCC-CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG 148709 |||| ||| || |||| |||||| || ||||| | ||| ||| || ||| | Sbjct 16903 GGCCACTG-ACACCCAAGCCAATCGGGCGGTGGCGTAAATTGCTCTTGCGAGC-TTCTGG 16960 Query 148710 -AGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAG-ATTGCGCACCACCACCTTTGTA 148766 | ||||| |||||| ||||| |||||| ||||| || || | |||||||| ||| Sbjct 16961 CACGGGATAATGGTTGATATCGATAATCTTGTTCAAGTTTTTCGTA--ACCACCTTAGTA 17018 Query 148767 ATTCTGCGCAGCAATTCAAAATCGTACTTGTCATCTACGAT------GCATCGGTTCACG 148820 | | | || | |||| ||| | |||| | | || | || | | Sbjct 17019 ACTTCATGAAGTTTCTTGAAATTGTAACTCTCATTTTCAATATCCACGTATGTGGGTAAA 17078 Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || | || || |||||||| || || |||||| ||||| ||||||| | ||||| Sbjct 17079 GCCAGGGATGCAAGATTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCA 17138 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG-TTGCA 148939 | |||||| ||| | || || | ||| || || ||| || ||| ||||| Sbjct 17139 GTGCACAGGTTGGAAGAGCGAATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCA 17198 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAA 148996 || ||||| || |||| | || || || ||| || | || | || | | Sbjct 17199 -GCATCCTTATAGCACATGAAGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTA 17257 Query 148997 CCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCG-TAGCGACCCTCCTGCTCGTAT--AA 149053 || || || | |||||| ||||| || | || |||||||| | |||||| Sbjct 17258 CC-AT--AGTTTCTGCGCACGCACAGTCT-CGCGACCACGACCCTCGCGTTCGTATTGTT 17313 Query 149054 AGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGG 149113 ||| | ||| ||||||| || || || ||| | || || ||||| | |||||| Sbjct 17314 CGTAGAGAGC--CTCGAACTTTTCCCCATACACATCAGCAAGGCCAGGGCATTCGTGCGG 17371 Query 149114 GCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCA 149173 ||||| | | ||| || || | | ||| || ||||| |||| || || | ||| Sbjct 17372 ACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCA 17431 Query 149174 GAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTT 149233 |||||||| | |||||||| || | ||||| ||| ||| |||||||| Sbjct 17432 AAGCGCGTAGAAAAGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTC 17491 Query 149234 GAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG 149293 ||| | | |||||||||||| ||||||||||||| || | || | || || || Sbjct 17492 GAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGGACG 17551 Query 149294 C---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTC 149350 | ||||| || || ||||| | ||| | ||||||| | || |||| ||||||| | Sbjct 17552 CTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTAC 17611 Query 149351 AATGCCACTGGCAGTGCCGTTAGTAGAGCTA--ATGCGA--CTGCCGCGCGCTCGCACTT 149406 | || | | ||| || || || | | || ||| ||| ||||| || Sbjct 17612 CAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTTGCGCGAATGC---- 17667 Query 149407 TGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA--GTCGCCGAG 149464 ||| || |||| || || || || | | ||||||||| ||||| | | ||| Sbjct 17668 GGTGTACATTGAGACCTATACCACCAGCATTCTTTGAGATCATGGCGCATGTTTTCAGAG 17727 Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524 ||| || ||||||||||| ||||| ||||||| | || || || || || Sbjct 17728 TGTC--ATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGAAGCCAA 17785 Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTG 149584 ||| | | | ||||||||| ||||| ||| || || || || || || || | Sbjct 17786 TTGGGCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTGAAGTACTTGTT 17845 Query 149585 GCTCATCATCTCGTACGACTCGA--GCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 ||| | | ||| | ||||| ||| || || ||||| ||||| || || || | Sbjct 17846 CGACATGAGGTTGTAGGTCTCGATTGCA-GC-CTCGATGTCTTCGCCGTGTATACCCACC 17903 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAG 149702 || || ||||| | ||| || ||||||| ||| || | ||| ||||| | || | Sbjct 17904 GCAACACGCATGATCATGTGTTGCGGTCTCTCTGCAATTTTCCCGTCAATTCTCAGGAGA 17963 Query 149703 TAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752 || | ||| || |||||| ||||||| || | || | ||||| || Sbjct 17964 TATGAGCGTTCAAGAGTCTTGAAGCCAAAATATTGATAATTGAAGTCCCG 18013 >seq990 Length=11377 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | |||| || ||||| |||||||| || || ||| ||| || | Sbjct 10991 AAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGACAACGTCCTACCGTCTTCCAAT 10932 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||||||| | || | | ||||||||| ||||| ||||| |||||||| ||| Sbjct 10931 TGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTGTCTTGAATC 10872 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||| ||| | | || || || | ||||| ||| |||||| Sbjct 10871 TTCGACTTCACGTTGTCAATCGTATCGCTCGATTCGACTTCTAGGGTGATGGTCTTGCCG 10812 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| ||||| |||||||| Sbjct 10811 GTGAGAGTTTTGACGAAGATCTGCAT 10786 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| || || || ||||| |||| || ||| | | | || ||||| |||||||| ||| Sbjct 10293 CTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCA-TCTTCGAGTTGCTTGCCGGCGA 10235 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || || || ||||| || |||||||| ||||||||||| ||||| ||||| | Sbjct 10234 AGATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTCTTGAATCTTGCTCTTGACAT 10175 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | |||||| | | ||| || |||| |||| ||| |||||||| Sbjct 10174 TATCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 10126 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||| ||||| ||| |||| | ||||||||||| |||||||| || || || Sbjct 10484 TCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTA 10425 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || || | | || | ||||||| | ||| || || | |||| | Sbjct 10424 TCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATG 10365 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||||||||| || || || || |||||||| Sbjct 10364 GTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410630034920