Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1295 118 3e-21 >seq1295 Length=44835 Score = 118 bits (130), Expect = 3e-21 Identities = 447/697 (64%), Gaps = 11/697 (2%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| ||||| ||||||||||| | ||| | || | | || || || ||| Sbjct 17995 TATTTTGGCTTCAAGACTCTTGAACGCTCATATCTCCTGAGAAT---TGACGGGAAAATT 17939 Query 110364 GAAC---GTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT 110420 | | | || ||||||||| | | ||||||||| | ||||| || || | || || Sbjct 17938 GCAGAGAGACCGCAACACATGATCATGCGTGTTGCGGTGGGTATACACGGCGAAGACATC 17879 Query 110421 AAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCT 110480 | |||| || || || | | | || ||| | | ||||||| | || Sbjct 17878 GAGGCTGCAATCGAGACCTACAACCTCATGTCGAACAAGTACTTCACTCATGCTTCACCA 17819 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA-AT 110539 ||||| || | || || || | ||||||||||| || |||||| || || Sbjct 17818 ACCCTGTTCATGGCCGGCACACCATCCGCCCAATTGGCTTCATG-TTTCTTGATTGACAT 17760 Query 110540 TAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAA 110599 || || || ||| || || |||||||| |||| ||| | || | || || || Sbjct 17759 GAAGGAGGACAGTATCGAGGGCATTTATGACACTCTGAAAACATGCGCCATGATCTCAAA 17700 Query 110600 AAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGC 110659 || |||| || || ||| | | || || |||||| ||| ||| | |||| | Sbjct 17699 GAATGCTGGTGGTATAGGTCTCAATGTACACCGCATTCGCGCAACAGGGTCGTATATTGG 17640 Query 110660 AACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGC 110719 | || || |||||| ||| | || || ||| | | || | |||| ||||||| Sbjct 17639 TGGCACAAATGGAACTTCAAACGGATTGGTACCTATGCTTCGTGTATACAACAACACTGC 17580 Query 110720 AAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACC 110776 ||||| |||||||||| || | | || | ||||| |||||||| || || Sbjct 17579 GCGGTATGTCGATCAAGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGCC 17520 Query 110777 TTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACA 110836 |||||| | || ||||| ||| | || || || || || || || |||||| Sbjct 17519 GTGGCATGCGGACATATTCTCCTTCCTCGACCTGCGCAAGAACCATGGCAAAGAAGAAGT 17460 Query 110837 AAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | || || || | || || || | ||||| |||| || ||||||||||| || | Sbjct 17459 CCGTGCTCGCGACCTTTTCTACGCGCTTTGGATCCCAGACTTGTTCATGAAACGGGTGGA 17400 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATA 110956 | || ||| ||| || | |||||||| || | ||||| || ||||||| || Sbjct 17399 GCAGAACAGCACATGGACTTTGATGTGTCCGCACGAATGCCCTGGCCTTGCTGATGTGTA 17340 Query 110957 TGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAA 110993 ||| || |||| || | || |||||| |||| ||| Sbjct 17339 TGGGGAAAAGTTCGAGGCTCTCTACGAACAATACGAA 17303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186787208236363