Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 199 4e-46
seq959 109 5e-19
seq990 84.2 2e-11
>seq1295
Length=44835
Score = 199 bits (220), Expect = 4e-46
Identities = 982/1539 (64%), Gaps = 47/1539 (3%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
|||||||| || |||||||| || || ||||| | || | || |||| | |||
Sbjct 16512 TTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACGGC 16571
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| ||| | ||||| ||| | || || | || | || || |||||| |||||||
Sbjct 16572 TCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCACC 16631
Query 147013 AACAATGAATTTCGCAGACCGTAC---GCACGGATGTTGTCCTTCAAAGTTTGCCAGTCC 147069
| |||||| || || | |||| | ||| || || |||| | | | |||||||
Sbjct 16632 AGCAATGAGTTGCGGACTCCGTGCTGTGCA---ATCTTCGCCTTGAGTGAATCCCAGTCC 16688
Query 147070 CACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGG 147127
|| | ||| | ||||||||| |||||||||||| || || | ||| ||| | |
Sbjct 16689 CAGAGATCG--GTTGGCGTCACGCCCCACATGTCGTATTGCAGTTCCCCTTTGCTGACAG 16746
Query 147128 GACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGA 147187
| ||||||| | || || ||| ||| ||||| ||| ||| ||||| |
Sbjct 16747 GGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTCCA 16806
Query 147188 GCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTC--GCTTCTTCGCT 147245
|||||| | || ||||| ||| ||| || ||||||| | ||| |||||
Sbjct 16807 ACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAG--CCGTCTTGCTTCGGGAGA 16864
Query 147246 CTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGAT 147305
||| | ||||| || ||| | || |||||||||| || || ||| | ||| ||
Sbjct 16865 GTCGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTGACACCCAAGCCAAT 16924
Query 147306 AGGTCGATGCTTTTCGTTGCTGCGCTT-CGCGCTC--GCTATGGGATAGTGGTTGCGATC 147362
|| || || | ||||| ||| || ||| | | |||||| |||||| |||
Sbjct 16925 CGGGCGGTGGCGTAAATTGCT---CTTGCGAGCTTCTGGCACGGGATAATGGTTGATATC 16981
Query 147363 AATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATC 147422
||||||||||| | ||| | || || ||||| | | | ||||||| |||||
Sbjct 16982 GATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCATGAAGTTTCTTGAAATT 17041
Query 147423 ATAAGTCCCGTCTTCGACACGTACGCAT-TGGTTCACGGCGATAGACGCCAGATTGCAGA 147481
||| || | | ||| | | ||| || ||| | | || | || || ||||||||||
Sbjct 17042 GTAACTCTCATTTTCAATATCCACGTATGTGGGT-AAAGCCAGGGATGCAAGATTGCAGA 17100
Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541
| || ||| || | | | |||||| || || || | |||||||||| | |
Sbjct 17101 CAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCGAA 17160
Query 147542 TGACTCCCAAATTTTGCTGATT-GCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTAC 147600
|| || | |||| ||| || | ||||| | ||||| || || || || |||| |
Sbjct 17161 TGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCA-GCATCCTTATAGCACATGAAG 17219
Query 147601 GGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGC 147657
|| || ||||| ||| | || | ||| ||| || || | |||||| |||
Sbjct 17220 GGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACC-AT--AGTTTCTGCGCACGC 17276
Query 147658 ACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717
|| || ||| || |||||| |||||| | ||||| | ||| |||| ||
Sbjct 17277 ACAGTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCCTCGAACTTTTCC 17336
Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777
|| || ||| |||||||| || || | ||||||||||||| | ||| || || |
Sbjct 17337 CCATACACATCAGCAAGGCCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTC 17396
Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837
| || ||| ||| |||| || || | ||| |||||||| | ||| ||||| ||
Sbjct 17397 TGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCA 17456
Query 147838 TTGCAATCCTCGGCGCCCATG----TTGCGTTTCAAATTAAGCACGCTATAGATGTCGGC 147893
| || || | ||||| ||||| || | || | | | ||||| ||
Sbjct 17457 CGGACTTCTTCTTTG-CCATGGTTCTTGCG---CAGGTCGAGGAAGGAGAATATGTCCGC 17512
Query 147894 GTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGAC 147950
||||| || |||| |||| ||| | ||||| |||| || || || || |||||
Sbjct 17513 ATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGAC 17572
Query 147951 ATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTT 148010
|| ||| | ||||||| | || || | ||| ||| ||| ||| | | ||| || ||
Sbjct 17573 ATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATT 17632
Query 148011 GGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC 148070
||| | || | || || || | ||| || || | || || || ||
Sbjct 17633 TGTGCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTACATTGAGACCTATACCACC 17692
Query 148071 GCCGTACTTTGATATGGCAGCGCA--ATCGCCCAATGTCGTGTAGATGCCGTCGATGCTG 148128
| | |||||| || ||||| | | | |||| || ||||| ||||| |||
Sbjct 17693 AGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTC--ATAAATGCCCTCGATACTG 17750
Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCG-GAATCCGCGTTCCCGCCGA 148187
|| | || | | ||| ||| ||||| ||| || ||| | | || | || || |||
Sbjct 17751 TCCTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGAT-GGTGTGCCGGCCAT 17809
Query 148188 GAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAAT 148247
||| ||||| || || || || || | || | ||| | | || ||||| ||
Sbjct 17810 GAACAGGGTTGGTGAAGCATGAGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGAT 17869
Query 148248 AGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGG 148307
|| | |||||||| |||||||| || |||| ||| || ||||||| |||||| || ||
Sbjct 17870 TGCAGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATGATCATGTGTTGCGG 17929
Query 148308 TCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACC 148367
|| || |||| || || || | || |||||| ||| || || ||| | ||
Sbjct 17930 TCTCTCTGCAATTTTCCCGTCAATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGAAGCC 17989
Query 148368 AAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406
||| || | |||| || || | || || |||||||
Sbjct 17990 AAAATATTGATAATTGAAGTCCCGATCATACACGATGGC 18028
>seq959
Length=28360
Score = 109 bits (120), Expect = 5e-19
Identities = 173/243 (71%), Gaps = 4/243 (2%)
Strand=Plus/Plus
Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGT 47092
|||||| | | || || || | ||| ||||||||||| | || | | |||| ||
Sbjct 16226 GAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCGTGACAGACTCATTGCCTGT 16285
Query 47093 CGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATC 47151
||| | || ||||||||| | || || |||||| |||| || ||||||||||| ||||
Sbjct 16286 CGCACTACTAGGCATGAACTC-CAACCTCATGTGCCAATACATCGAGTTTGTGGCCGATC 16344
Query 47152 GTCTGTTGGTGCAGCTCGGACAACCG-AAATATTTTAATGCTCGTAATCCGTTTGAGTTT 47210
| || || | |||||| |||| | | |||| || || || || ||||| ||
Sbjct 16345 GCCTACTGCTCGCGCTCGG-CAACAGCAGGTATTACAACGCCACCAACCCATTTGACTTC 16403
Query 47211 ATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270
||| | ||||| ||| | | |||||| |||||||| || ||||| ||||||| || |||
Sbjct 16404 ATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTTTGAGAAGAGAGTCGGTGATTAT 16463
Query 47271 AAG 47273
||
Sbjct 16464 CAG 16466
>seq990
Length=11377
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991
||| |||||||||||||||||||||| || || ||||||||| || || |||| |
Sbjct 10293 CTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAA 10234
Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
||| || || || ||||||||||| || ||||| || ||
Sbjct 10233 GATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTC 10195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476601173291880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |