Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1295 199 4e-46 seq959 109 5e-19 seq990 84.2 2e-11 >seq1295 Length=44835 Score = 199 bits (220), Expect = 4e-46 Identities = 982/1539 (64%), Gaps = 47/1539 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 |||||||| || |||||||| || || ||||| | || | || |||| | ||| Sbjct 16512 TTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACGGC 16571 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || ||| | ||||| ||| | || || | || | || || |||||| ||||||| Sbjct 16572 TCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCACC 16631 Query 147013 AACAATGAATTTCGCAGACCGTAC---GCACGGATGTTGTCCTTCAAAGTTTGCCAGTCC 147069 | |||||| || || | |||| | ||| || || |||| | | | ||||||| Sbjct 16632 AGCAATGAGTTGCGGACTCCGTGCTGTGCA---ATCTTCGCCTTGAGTGAATCCCAGTCC 16688 Query 147070 CACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGG 147127 || | ||| | ||||||||| |||||||||||| || || | ||| ||| | | Sbjct 16689 CAGAGATCG--GTTGGCGTCACGCCCCACATGTCGTATTGCAGTTCCCCTTTGCTGACAG 16746 Query 147128 GACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGA 147187 | ||||||| | || || ||| ||| ||||| ||| ||| ||||| | Sbjct 16747 GGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTCCA 16806 Query 147188 GCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTC--GCTTCTTCGCT 147245 |||||| | || ||||| ||| ||| || ||||||| | ||| ||||| Sbjct 16807 ACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAG--CCGTCTTGCTTCGGGAGA 16864 Query 147246 CTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGAT 147305 ||| | ||||| || ||| | || |||||||||| || || ||| | ||| || Sbjct 16865 GTCGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTGACACCCAAGCCAAT 16924 Query 147306 AGGTCGATGCTTTTCGTTGCTGCGCTT-CGCGCTC--GCTATGGGATAGTGGTTGCGATC 147362 || || || | ||||| ||| || ||| | | |||||| |||||| ||| Sbjct 16925 CGGGCGGTGGCGTAAATTGCT---CTTGCGAGCTTCTGGCACGGGATAATGGTTGATATC 16981 Query 147363 AATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATC 147422 ||||||||||| | ||| | || || ||||| | | | ||||||| ||||| Sbjct 16982 GATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCATGAAGTTTCTTGAAATT 17041 Query 147423 ATAAGTCCCGTCTTCGACACGTACGCAT-TGGTTCACGGCGATAGACGCCAGATTGCAGA 147481 ||| || | | ||| | | ||| || ||| | | || | || || |||||||||| Sbjct 17042 GTAACTCTCATTTTCAATATCCACGTATGTGGGT-AAAGCCAGGGATGCAAGATTGCAGA 17100 Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541 | || ||| || | | | |||||| || || || | |||||||||| | | Sbjct 17101 CAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCGAA 17160 Query 147542 TGACTCCCAAATTTTGCTGATT-GCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTAC 147600 || || | |||| ||| || | ||||| | ||||| || || || || |||| | Sbjct 17161 TGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCA-GCATCCTTATAGCACATGAAG 17219 Query 147601 GGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGC 147657 || || ||||| ||| | || | ||| ||| || || | |||||| ||| Sbjct 17220 GGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACC-AT--AGTTTCTGCGCACGC 17276 Query 147658 ACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717 || || ||| || |||||| |||||| | ||||| | ||| |||| || Sbjct 17277 ACAGTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCCTCGAACTTTTCC 17336 Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777 || || ||| |||||||| || || | ||||||||||||| | ||| || || | Sbjct 17337 CCATACACATCAGCAAGGCCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTC 17396 Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837 | || ||| ||| |||| || || | ||| |||||||| | ||| ||||| || Sbjct 17397 TGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCA 17456 Query 147838 TTGCAATCCTCGGCGCCCATG----TTGCGTTTCAAATTAAGCACGCTATAGATGTCGGC 147893 | || || | ||||| ||||| || | || | | | ||||| || Sbjct 17457 CGGACTTCTTCTTTG-CCATGGTTCTTGCG---CAGGTCGAGGAAGGAGAATATGTCCGC 17512 Query 147894 GTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGAC 147950 ||||| || |||| |||| ||| | ||||| |||| || || || || ||||| Sbjct 17513 ATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGAC 17572 Query 147951 ATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTT 148010 || ||| | ||||||| | || || | ||| ||| ||| ||| | | ||| || || Sbjct 17573 ATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATT 17632 Query 148011 GGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC 148070 ||| | || | || || || | ||| || || | || || || || Sbjct 17633 TGTGCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTACATTGAGACCTATACCACC 17692 Query 148071 GCCGTACTTTGATATGGCAGCGCA--ATCGCCCAATGTCGTGTAGATGCCGTCGATGCTG 148128 | | |||||| || ||||| | | | |||| || ||||| ||||| ||| Sbjct 17693 AGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTC--ATAAATGCCCTCGATACTG 17750 Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCG-GAATCCGCGTTCCCGCCGA 148187 || | || | | ||| ||| ||||| ||| || ||| | | || | || || ||| Sbjct 17751 TCCTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGAT-GGTGTGCCGGCCAT 17809 Query 148188 GAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAAT 148247 ||| ||||| || || || || || | || | ||| | | || ||||| || Sbjct 17810 GAACAGGGTTGGTGAAGCATGAGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGAT 17869 Query 148248 AGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGG 148307 || | |||||||| |||||||| || |||| ||| || ||||||| |||||| || || Sbjct 17870 TGCAGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATGATCATGTGTTGCGG 17929 Query 148308 TCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACC 148367 || || |||| || || || | || |||||| ||| || || ||| | || Sbjct 17930 TCTCTCTGCAATTTTCCCGTCAATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGAAGCC 17989 Query 148368 AAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 ||| || | |||| || || | || || ||||||| Sbjct 17990 AAAATATTGATAATTGAAGTCCCGATCATACACGATGGC 18028 >seq959 Length=28360 Score = 109 bits (120), Expect = 5e-19 Identities = 173/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGT 47092 |||||| | | || || || | ||| ||||||||||| | || | | |||| || Sbjct 16226 GAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCGTGACAGACTCATTGCCTGT 16285 Query 47093 CGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATC 47151 ||| | || ||||||||| | || || |||||| |||| || ||||||||||| |||| Sbjct 16286 CGCACTACTAGGCATGAACTC-CAACCTCATGTGCCAATACATCGAGTTTGTGGCCGATC 16344 Query 47152 GTCTGTTGGTGCAGCTCGGACAACCG-AAATATTTTAATGCTCGTAATCCGTTTGAGTTT 47210 | || || | |||||| |||| | | |||| || || || || ||||| || Sbjct 16345 GCCTACTGCTCGCGCTCGG-CAACAGCAGGTATTACAACGCCACCAACCCATTTGACTTC 16403 Query 47211 ATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 ||| | ||||| ||| | | |||||| |||||||| || ||||| ||||||| || ||| Sbjct 16404 ATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTTTGAGAAGAGAGTCGGTGATTAT 16463 Query 47271 AAG 47273 || Sbjct 16464 CAG 16466 >seq990 Length=11377 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| |||||||||||||||||||||| || || ||||||||| || || |||| | Sbjct 10293 CTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAA 10234 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| || || || ||||||||||| || ||||| || || Sbjct 10233 GATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTC 10195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601173291880