Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq959 156 6e-32 seq243 105 1e-16 seq1295 86.0 9e-11 >seq959 Length=28360 Score = 156 bits (172), Expect = 6e-32 Identities = 344/506 (68%), Gaps = 10/506 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| |||||||| || ||||| || |||||||| ||||| ||||||||| |||| | Sbjct 15620 GATATGGCAAATGTAC-AAGAAGGCGGAAGCCTCCTTCTGGACGGCCGAGGAGATCGATC 15678 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891 | || | ||||| || ||| || |||||||| |||||| Sbjct 15679 TTTCAAAAGATTTGCATGACTGGAACAAGCGCCTGAATGATGACGAGCGTTTCTTCATCT 15738 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 || ||||||||||||||| || || || || || || ||||||||| | || Sbjct 15739 CTCATGTCCTCGCCTTTTTT-GCGGCATCAGACGGGATTGTCAACGAGAACCTCGTCGAG 15797 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || ||||| ||| | || || ||||| | || ||||| ||||||||| Sbjct 15798 CGATTCTCAGCCGAGGTGCAAATACCCGAAGCACGCTGCTTCTACGGCTTCCAGATCATG 15857 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || || ||||||||||| || ||||| || || |||||||||||| ||| || ||| Sbjct 15858 ATGGAGAATATCCACTCTGAGACTTACTCTCTGCTCATCGACACCTACATCAGCGAACCG 15917 Query 1456072 GTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | | | || | || || ||||||||||| | || | | | || ||||| Sbjct 15918 AAACA-ACGCACGTATCTATTCAACGCCATCGACAACATCCCATGCATCGGTAAGAAGGC 15976 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 || |||||| || ||||| | | | | | ||||| || | | || ||||| Sbjct 15977 GGATTGGGCGCTGCGATGGATTAGCGA-TAAGAATTCGAC-GTTCGGCTGTCGTCTCGTT 16034 Query 1456191 GGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | || ||||| || |||||||| || ||||| || ||| |||| || |||||| Sbjct 16035 GCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGCTC 16094 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || ||||| || |||||||||||||| Sbjct 16095 AAAAAGCGTGGTCTCATGCCCGGTCT 16120 >seq243 Length=163308 Score = 105 bits (116), Expect = 1e-16 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 || |||||||||||||| || || | | ||| |||||| ||||||||||| Sbjct 58385 GTTCTCAAGCAGGTGCATCCTGACACGGGT-----ATC-TCCAACCGCGCCATGTCGATC 58332 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||||| ||||| |||||||| | || ||| ||| || ||||| |||||| Sbjct 58331 CTGAACTCATTTGTGAACGACATATTTGAGCGCGTCGCAACTGAGGCATCCAAGCTGGCG 58272 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | ||||||| || ||| ||||||||||||||||| | || || || ||| Sbjct 58271 GCGTACAACAAGAAGTCGACCATCTCATCGCGCGAGATCCAGACCTCTGTCCGGCTCATC 58212 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| |||||| ||||||| ||| || || || || ||||||| Sbjct 58211 CTGCCCGGCGAGCTGGCCAAGCATGCTGTGTCTGAAGGCACCA 58169 >seq1295 Length=44835 Score = 86.0 bits (94), Expect = 9e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCT 262937 |||||||||||| |||| |||| | || |||||| || | |||||||| ||||| Sbjct 16691 CTGGGACTGGGATTCACTCAAGGCGAAGATTGCACAGCACGGAGTCCGCAACTCATTGCT 16632 Query 262938 CGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGA 262997 ||||||| |||||| || || |||| ||||||||| ||||| || || ||||| Sbjct 16631 GGTGGCGCCCATGCCAACAGCGTCGACTTCGCAGATCATGGGCTTCAATGAATGTTTCGA 16572 Query 262998 GGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAA 263057 | ||| ||||| |||| || || || || | ||||| || |||||||| Sbjct 16571 GCCGTACACTTCGAACATTTACAGTCGTCGTGTTCTAGCTGGCGAGTTCCAGGTGGTCAA 16512 Query 263058 CC 263059 || Sbjct 16511 CC 16510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177648871556646