Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq990 125 6e-24 seq1047 89.7 5e-13 >seq990 Length=11377 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || ||||||||| | || || ||||| ||||| ||||| || | | Sbjct 11012 CCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGAC 10953 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | |||| |||| ||||| ||||| || || || | ||||||||| | ||| Sbjct 10952 AACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGT 10893 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCAC-CGTGTCGCTCGATTCCAC 35688 | || ||||||||| ||||| ||||| |||| || ||| ||||||||||| || Sbjct 10892 ATGCCCTCCTTGTCTTGAATCTTCGACTTCAC-GTTGTCAATCGTATCGCTCGATTCGAC 10834 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | |||||| || || |||||||| Sbjct 10833 TTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| ||||| ||||| ||||| ||||||||||| || | | Sbjct 10784 CCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGAC 10725 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | | || ||||| ||||| || || || || | | || ||||| | ||| Sbjct 10724 AACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGA 10665 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||| ||||| ||||| ||||| |||| | | ||| || || ||||| || Sbjct 10664 ATACCCTCTTTGTCTTGAATCTTCGACTTCA-CGTTGTCTATCGTATCACTTGATTCGAC 10606 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | |||||| ||||| || ||||| Sbjct 10605 TTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 ||||| || |||||||||||||| || | | ||| || | || || ||||| || || Sbjct 10526 GTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCA 10467 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || ||||| ||||||||||||| ||| | | ||| || || ||| ||| | || Sbjct 10466 GCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGAT-TTTCGATTT 10408 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 |||| | | |||||| ||| || ||||| | ||||| ||||| || |||| || Sbjct 10407 CACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGT 10348 Query 35719 TTTCACAAATATCTGCAT 35736 || ||||| |||||||| Sbjct 10347 CTTGACAAAGATCTGCAT 10330 >seq1047 Length=44052 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 35496 TCATCTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAA 35555 || ||| ||| ||||||||| || | | |||| ||| | || |||||||| |||| Sbjct 5362 TCCTCTTCTTACCTCCACCACGCAAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAA 5421 Query 35556 TGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCT 35615 | || ||||||| | ||| || | || || |||||||| || ||||| |||| |||| Sbjct 5422 TATTATAATCGGAGAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCT 5481 Query 35616 GCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||| || | | ||| ||||| ||| Sbjct 5482 GCTGGTCCGGTGGGATACCCTCTTTGTCTATG 5513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450784116429640