Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq990 125 6e-24
seq1047 89.7 5e-13
>seq990
Length=11377
Score = 125 bits (138), Expect = 6e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|| ||||| | | || ||||||||| | || || ||||| ||||| ||||| || | |
Sbjct 11012 CCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGAC 10953
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || | |||| |||| ||||| ||||| || || || | ||||||||| | |||
Sbjct 10952 AACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGT 10893
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCAC-CGTGTCGCTCGATTCCAC 35688
| || ||||||||| ||||| ||||| |||| || ||| ||||||||||| ||
Sbjct 10892 ATGCCCTCCTTGTCTTGAATCTTCGACTTCAC-GTTGTCAATCGTATCGCTCGATTCGAC 10834
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || || || | |||||| || || ||||||||
Sbjct 10833 TTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || ||||| ||||| ||||| ||||| ||||||||||| || | |
Sbjct 10784 CCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGAC 10725
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| |||| | | || ||||| ||||| || || || || | | || ||||| | |||
Sbjct 10724 AACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGA 10665
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| | ||| ||||| ||||| ||||| |||| | | ||| || || ||||| ||
Sbjct 10664 ATACCCTCTTTGTCTTGAATCTTCGACTTCA-CGTTGTCTATCGTATCACTTGATTCGAC 10606
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || || || | |||||| ||||| || |||||
Sbjct 10605 TTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558
Score = 102 bits (112), Expect = 7e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599
||||| || |||||||||||||| || | | ||| || | || || ||||| || ||
Sbjct 10526 GTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCA 10467
Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659
|| || ||||| ||||||||||||| ||| | | ||| || || ||| ||| | ||
Sbjct 10466 GCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGAT-TTTCGATTT 10408
Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718
|||| | | |||||| ||| || ||||| | ||||| ||||| || |||| ||
Sbjct 10407 CACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGT 10348
Query 35719 TTTCACAAATATCTGCAT 35736
|| ||||| ||||||||
Sbjct 10347 CTTGACAAAGATCTGCAT 10330
>seq1047
Length=44052
Score = 89.7 bits (98), Expect = 5e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 35496 TCATCTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAA 35555
|| ||| ||| ||||||||| || | | |||| ||| | || |||||||| ||||
Sbjct 5362 TCCTCTTCTTACCTCCACCACGCAAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAA 5421
Query 35556 TGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCT 35615
| || ||||||| | ||| || | || || |||||||| || ||||| |||| ||||
Sbjct 5422 TATTATAATCGGAGAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCT 5481
Query 35616 GCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
||||||||| || | | ||| ||||| |||
Sbjct 5482 GCTGGTCCGGTGGGATACCCTCTTTGTCTATG 5513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450784116429640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |