Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1295 136 4e-27 seq990 134 1e-26 >seq1295 Length=44835 Score = 136 bits (150), Expect = 4e-27 Identities = 875/1384 (63%), Gaps = 43/1384 (3%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||||||| | |||| || |||||||| || |||||||||||||| || || || | Sbjct 17926 CAACACATGATCATGCGTGTTGCGGTGGGTATACACGGCGAAGACATCGAGGCTGCAATC 17867 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | | ||||| || | || || || ||||| || ||| |||| Sbjct 17866 GAGACCTACAACCTCATGTCGAACAAGTACTTCACTCATGCTTCACCAACCCTGTTCATG 17807 Query 7684 GCGGGCACA-AACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || |||||| | |||| |||||| | || ||||| ||| | |||| || ||||| Sbjct 17806 GCCGGCACACCATCCGCC-CAATTGGCTTCATGTTTCTTGATTGACATGAAGGAGGACAG 17748 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 ||||| |||||||| |||| ||| ||||||| || || || | | || || Sbjct 17747 TATCGAGGGCATTTATGACACTCTGAAAACATGCGCCATGATCTCAAAGAATGCTGGTGG 17688 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCA-ACGGTAGCCGCATCGTGTCCACCAACG 7861 |||||||| || ||| || | | ||||| | | ||| | | ||| ||| || | Sbjct 17687 TATAGGTCTCAATGTACACCGCATTCGCGCAACAGGGTCGTATATTGGTG-GCACAAATG 17629 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 ||| | | ||| || | || ||| | || || | ||| ||| | | ||| |||| | Sbjct 17628 GAACTTCAAACGGATTGGTACCTATGCTTCGTGTATACAACAACACTGCGCGGTATGTCG 17569 Query 7922 ACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 | || || || ||||| || ||| |||||||||| | ||||||||||| |||| Sbjct 17568 ATCAAGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGCCGTGGCATGCGG 17509 Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCG 8038 |||| | | | | || | ||||| ||| || ||||| | || |||| Sbjct 17508 ACATATTCTCCTTCCTCGACCTGCGCAAGAACCATGGCAAAGAAGAAGTCCGTGCTCGCG 17449 Query 8039 ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGAC-GCA 8097 | || |||| || | ||| | || || |||| |||| || || | || ||| Sbjct 17448 ACCTTTTCTACGCGCTTTGGATCCCAGACTTGTTCATGAAACGGGTGGAGCAGAACAGCA 17389 Query 8098 CAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAA 8157 | |||| | | ||||| || | |||||| | | || || || ||| Sbjct 17388 C-ATGGACTTTGATGTGTCCGCACGAATGCCCTGGCCTTGCTGATGTGTATGGGGAAAAG 17330 Query 8158 TTTGAACAATTGTACAAACAATACGAACACGACGG-CGCGTACGTGCGGCAAGTGAAAGC 8216 || || | ||| |||||||||||| ||| || || | || | | | ||| || Sbjct 17329 TTCGAGGCTCTCTACGAACAATACGAACGCGAGGGTCGTGGTCGCGAGAC-TGTGCGTGC 17271 Query 8217 GCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCT 8276 || | || ||| || |||| ||||| || || |||| || | |||| Sbjct 17270 GCAGAAACTATGGTACGCAATCCTCGAGGCTCAAACGGAGACAGGTACTCCCTTCATGTG 17211 Query 8277 GTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAG 8336 || || || ||| ||| ||| ||| || | ||| | || |||||| | | Sbjct 17210 CTATAAGGATGCTGCAAACAGAAAATCCAACCAGAAAAACCTTGGTACCATTCGCTCTTC 17151 Query 8337 CAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCT 8396 ||| |||||| |||| ||| | |||||| || || || || || || || |||||||| Sbjct 17150 CAACCTGTGCACTGAGATTATGGAGTACACTGCCCCTGATGAGGTCGCTGTCTGCAATCT 17091 Query 8397 AGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACA 8456 || || || |||| | | | ||| ||| | ||| | || || ||| Sbjct 17090 TGCATCCCTGGCTTTACCCACATACGTGGAT----ATTGAAA---ATGAGAGTT---ACA 17041 Query 8457 ATT--GAAAAACGCCGTGCAAGTGAC-------GGTACG--CAATTTAGATCGCATCATT 8505 ||| | |||| | || |||| || | |||| || || | || || Sbjct 17040 ATTTCAAGAAACTTCATG-AAGTTACTAAGGTGGTTACGAAAAACTTGAACAAGATTATC 16982 Query 8506 GATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTT 8565 ||| |||| ||||||| || |||||| ||| || | |||||| | || || Sbjct 16981 GATATCAACCATTATCCCGTGCCAGAAGCTCGCAAGAGCAATTTACGCCACCGCCCGATT 16922 Query 8566 GGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATG--TTGCGCCTCCCCTACGAAA 8623 ||| |||| || || |||||||| || || || || | ||| | || | ||| Sbjct 16921 GGCTTGGGTGTCAGTGGCCTGGCCGATGC--TTTCCTTGCTCTTCGCATGCCGTTCGACT 16864 Query 8624 GCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAG 8683 | ||||| | ||| ||||| | || || || | ||| |||| || || | Sbjct 16863 CTCCCGAAGCAAGACGGCTAAACATTCAGATCTTCGAGACCATTTATCACGGAGCGTTGG 16804 Query 8684 AAGCCAGCTGTCAACTTGCCCGAG-AATTGGGCACGTACGAATCGTACGCGGGCAGCCCT 8742 | ||| ||| ||| || | ||| || | || | || || | ||||| ||| |||| Sbjct 16803 AGGCCTCCTGCGAAC-TGGCGGAGCAACTCGGTCCATATGAGACTTACGCTGGCTCCCCT 16745 Query 8743 GCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACC--TCTTTGTGGA 8800 | |||| || | ||||||||||||||||| || ||||| ||| ||| || ||| Sbjct 16744 GTCAGCAAAGGGGAACTGCAATACGACATGTGGGGCGTGACGCCAACCGATCTCTG-GGA 16686 Query 8801 ATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGG 8860 | ||| | | | || || ||||| || ||| | ||||| || || |||||| Sbjct 16685 CTGGGATTCACTCAAGGCG-AAGATTGCACAGCACGGAGTCCGCAACTCATTGCTGGTGG 16627 Query 8861 CTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGT 8920 | |||||| || || ||||| | || || ||||| ||| |||| || ||||||| Sbjct 16626 CGCCCATGCCAACAGCGTCGACTTCGCAGATCATGGGCTTCAATGAATGTTTCGAGCCGT 16567 Query 8921 TCAC 8924 ||| Sbjct 16566 ACAC 16563 >seq990 Length=11377 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| || ||||| || || ||| ||||||||||||||||| Sbjct 10556 CCACCACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAG 10497 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| || |||||||| |||||||| || || || Sbjct 10496 AGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGG 10437 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| ||||| ||| || ||| | ||||||||||| || || Sbjct 10436 ATACCCTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACC 10377 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| | || || || || || ||||| Sbjct 10376 TCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || || || |||||| |||||||||||||||||||||| | ||| | Sbjct 10319 AGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGG 10260 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||| || ||||| || || |||| || |||||||| || || || ||||| Sbjct 10259 CCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCTTCC 10200 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || ||||| || | ||||| ||||| || || |||||||| Sbjct 10199 TTGTCTTGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAGAGTG 10140 Query 134676 ATGGTTTTACCGGT 134689 ||||| || ||||| Sbjct 10139 ATGGTCTTGCCGGT 10126 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| |||| || | ||||| || |||||| |||||||||||||| | | Sbjct 10784 CCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGAC 10725 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 |||| | | | || || || || ||||| || || || | | || || || ||||| Sbjct 10724 AACGTTCTCCCA-TCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGG 10666 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || ||||| |||||||| || || || ||| | || || ||||| || Sbjct 10665 AATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGAC 10606 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| | ||||||||| || |||||||| Sbjct 10605 TTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505387767681160