Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq959 140 4e-28 seq1295 138 2e-27 >seq959 Length=28360 Score = 140 bits (154), Expect = 4e-28 Identities = 372/562 (66%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||||||||| || | ||||||||| | ||| | ||||| ||||| || || Sbjct 16177 CAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAGGTCAGA 16118 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||| |||||||||||||||||||| || |||| || || || | ||| ||||| Sbjct 16117 CCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGAAGAAA 16058 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GT 39793 ||||| ||||| || || || ||||| || | ||| | | | || |||| Sbjct 16057 ATGCCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAACGTCGAATTCTTATCGCTA 15998 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| | | |||||||| || ||||| | || || || | || || || || Sbjct 15997 ATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGATGTTGTCGATGGCGTTG 15938 Query 39854 AAGAGATA-ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 || ||||| || || || | || | | || || || || | |||| || | Sbjct 15937 AATAGATACGTGCGTTGTTTCGGT-TCGCTGATGTAGGTGTCGATGAGCAGAGAGTAAGT 15879 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || ||||| || || ||| ||||| || ||||| || || | |||||| | || Sbjct 15878 CTCAGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGTGCTTCGGGTAT 15819 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||| ||||| | | |||| || | | || || || || || || || || || Sbjct 15818 TTGCACCTCGGCTGAGAATCGCTCGACGAGGTTCTCGTTGACAATCCCGTCTGATGCCGC 15759 Query 40033 AAAAAATGCCAATACAT----GTTTAATAAA--ATATTTTTCA-TCGGGTGTCAATTTAT 40085 |||||| || | |||| | | || ||| | | ||| || || | || | Sbjct 15758 AAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCATCATTCAGGCG----CTTGT 15703 Query 40086 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTG 40145 ||||||||| | ||||||||| | ||| | || || || ||||| || || || || | Sbjct 15702 TCCAGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCCAGAAGGAGGCTTCCG 15643 Query 40146 CCTTTTTGTACATGTTCCATAT 40167 |||| |||||||| | |||||| Sbjct 15642 CCTTCTTGTACATTTGCCATAT 15621 >seq1295 Length=44835 Score = 138 bits (152), Expect = 2e-27 Identities = 1172/1870 (63%), Gaps = 52/1870 (3%) Strand=Plus/Plus Query 68349 CGACTTT-ATTTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTAC 68407 ||||||| | ||| |||| || | || || || || |||| || || | |||||| Sbjct 16147 CGACTTTGAGTTTTTCCTGGTCAACAGTGAATTGGATCGGTGCCGAGGCCGCCATTGTAC 16206 Query 68408 GTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTA 68467 | || |||||||| || ||||| || || | |||| ||| ||||||||| || || | Sbjct 16207 GGAGGTAGTACATGCCAGTTTTGAGGCCCAATTTCCAACCGGTGAAATGCATGCTGGTGA 16266 Query 68468 GTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAG 68527 || | || || || |||||||| | ||| ||| ||| |||||||| | Sbjct 16267 TCTTACCCATGGTGGGTTCTTTCATGTGAATATTTAGCGAATGAGATTGGTCGATGAATG 16326 Query 68528 CTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAA 68587 | || | || || ||||| | | |||| ||| |||||||| | |||||| Sbjct 16327 CGCCGCGGTCAGCAGCCATCTGCACAATATGACGCTGACTGATTTCCCATACAGTCTTGT 16386 Query 68588 AAATCTGTTTGATATCATCTGGAAGGCTCGTATTT---TGAATGGATCCACCATCGGATA 68644 ||| ||||| |||||||||| | ||| | |||| || || ||||| | | Sbjct 16387 AAAGGGCTTTGAGGTCATCTGGAATGTTCGGGATGCGCTGAACAGACCCGCCATCTGCAA 16446 Query 68645 TAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGAT 68704 | || ||||| || | || ||| | | || | | | || | Sbjct 16447 TGATGCGGTTCTTCATGTTGTCTGACCAGAGACCGCGATCGACAAGGTCCTTTAGCAACC 16506 Query 68705 GCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTAT 68764 || || || | || || || |||| || || | |||| ||||||| || || | Sbjct 16507 ATGGGTTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGT 16566 Query 68765 ATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTG 68824 | || || | | ||||||| |||| || || | ||| || || |||||||| || | Sbjct 16567 ACGGCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCG 16626 Query 68825 CCACCAATAAACTATTTCTAAGACCATGTGTTATG--ATTTTATCTTTTAGATGTTTCCA 68882 |||||| || || | | || ||| | || || || | || || | ||| Sbjct 16627 CCACCAGCAATGAGTTGCGGACTCC--GTGCTGTGCAATCTTCGCCTTGAGTGAATCCCA 16684 Query 68883 ATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGC 68942 ||||| ||||| | ||| || ||| | |||||||| || || || || | Sbjct 16685 GTCCCAGAGATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAGTTCCCCTTTGCTGAC 16744 Query 68943 ATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTC 69002 | || ||| || || ||||| || || || || || ||||| || ||||| Sbjct 16745 AGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTC 16804 Query 69003 TAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACT 69062 || || |||| |||||| || ||||| |||| | || || | |||||| || Sbjct 16805 CAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGCCGTCTTGCTTCGGGAGA 16864 Query 69063 ATCGAATGGATAATGTAAA-AG-AATAAATGCATCTGCCAATCC-CTGAACCCCAATACC 69119 ||||| || ||| || || || || ||||| |||| || |||| ||||| || Sbjct 16865 GTCGAACGGC--ATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTGACACCCAAG-CC 16921 Query 69120 GATAGGTCTATGTCTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATAT 69178 || || | || | | | ||| ||| | ||||||||| | ||||||| || |||| Sbjct 16922 AATCGGGCGGTGGCG-TAAATTGCTCTTGCGAGCTTCTGGCACGGGATAATGGTTGATAT 16980 Query 69179 CTATAATTTTATT-AAGATTT-CGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAA 69236 | ||||| || || ||| ||| || | || || ||| || || | ||||| || Sbjct 16981 CGATAATCTTGTTCAAGTTTTTCGTA--ACCACCTTAGTAACTTCATGAAGTTTCTTGAA 17038 Query 69237 ATCAAATCGTCCATCTATAACAAACA--TAT-TCAGT---GCTACAGATGCTAGATTACA 69290 || | | ||| | || | || ||| | || || | ||||| ||||| || Sbjct 17039 ATTGTAACTCTCATTTTCAATATCCACGTATGTGGGTAAAGCCAGGGATGCAAGATTGCA 17098 Query 69291 AACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTT 69350 || || ||||||| || | || | || ||||| || || || || | | Sbjct 17099 GACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCG 17158 Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 || || || || |||| ||| || ||| |||| || ||||| || || || Sbjct 17159 AATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCAGCATCCTTATAGCACATGAA 17218 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 |||||||| || || | |||| |||| || | | ||| | | ||| | Sbjct 17219 GGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATAGTTTCTGCGCACGCA- 17277 Query 69471 TACGGTCTTGTAAC---GCTTCTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCA 69525 | |||| | || | ||| ||| |||||| ||| | |||| ||||| | Sbjct 17278 --CAGTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCC--TCGAACTTT 17333 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 || || | |||||| | | ||||| ||||| | ||||||||||| | ||| Sbjct 17334 TCCCCATACACATCAGCAAGGCCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTG 17393 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCT 69644 | | || || |||||||| || | || || |||||||| || || ||| || || | Sbjct 17394 TTCTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAA-AGGTCGCG 17452 Query 69645 GGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGA 69704 | | |||||| || || || || || ||||| || | || || | Sbjct 17453 AGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGC 17512 Query 69705 ATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTAT 69764 |||||| || || ||||| || || | | | || || || || || || || ||||| | Sbjct 17513 ATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGAC 17572 Query 69765 GTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATT 69824 || | |||||||| || || || | ||||| || | | || || || | ||||| Sbjct 17573 ATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATT 17632 Query 69825 TGTTCCAGAAATATAACTTCCTCTTGCGCGAAT----ATTACTAATAGATAGACCTATTC 69880 ||| ||| |||||| ||| |||||||||| ||| || | |||||||| | Sbjct 17633 TGTGCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTAC--ATTG--AGACCTATAC 17688 Query 69881 CTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGC 69940 | || || | || ||||| | || || ||||| |||||||| || ||||| || | Sbjct 17689 CACCAGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATAC 17748 Query 69941 TATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTT--GATGATGTATAGTTCCCGC 69998 | || || |||||| || | ||||| || || || | |||| || || || Sbjct 17749 TGTCCTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGATG--GTGTGCCGGC 17806 Query 69999 ATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTC 70058 | || | || || || || |||||||| | || | || | || ||||| || || Sbjct 17807 CATGAACAGGGTTGGTGAAGCATGAGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTC 17866 Query 70059 AATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 || || | || || || | | | || || || | ||| |||||||| | ||| || | Sbjct 17867 GATTGCAGCCTCGATGTCTTCGCCG-TGTATACCCACCGCAACACGCATGATCATGTGTT 17925 Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177 | |||| ||| | |||| | ||| ||| || ||||| ||| ||||| || | Sbjct 17926 GCGGTCTCTCTGCAATTTTCCCGTCAATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGA 17985 Query 70178 ACCCAAAATA 70187 | |||||||| Sbjct 17986 AGCCAAAATA 17995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686894349156120