Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq959 140 4e-28
seq1295 138 2e-27
>seq959
Length=28360
Score = 140 bits (154), Expect = 4e-28
Identities = 372/562 (66%), Gaps = 16/562 (3%)
Strand=Plus/Minus
Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676
||||||||||| || | ||||||||| | ||| | ||||| ||||| || ||
Sbjct 16177 CAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAGGTCAGA 16118
Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736
|| ||||| |||||||||||||||||||| || |||| || || || | ||| |||||
Sbjct 16117 CCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGAAGAAA 16058
Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GT 39793
||||| ||||| || || || ||||| || | ||| | | | || ||||
Sbjct 16057 ATGCCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAACGTCGAATTCTTATCGCTA 15998
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||| | | |||||||| || ||||| | || || || | || || || ||
Sbjct 15997 ATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGATGTTGTCGATGGCGTTG 15938
Query 39854 AAGAGATA-ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912
|| ||||| || || || | || | | || || || || | |||| || |
Sbjct 15937 AATAGATACGTGCGTTGTTTCGGT-TCGCTGATGTAGGTGTCGATGAGCAGAGAGTAAGT 15879
Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972
|| || ||||| || || ||| ||||| || ||||| || || | |||||| | ||
Sbjct 15878 CTCAGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGTGCTTCGGGTAT 15819
Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032
||| ||||| | | |||| || | | || || || || || || || || ||
Sbjct 15818 TTGCACCTCGGCTGAGAATCGCTCGACGAGGTTCTCGTTGACAATCCCGTCTGATGCCGC 15759
Query 40033 AAAAAATGCCAATACAT----GTTTAATAAA--ATATTTTTCA-TCGGGTGTCAATTTAT 40085
|||||| || | |||| | | || ||| | | ||| || || | || |
Sbjct 15758 AAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCATCATTCAGGCG----CTTGT 15703
Query 40086 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTG 40145
||||||||| | ||||||||| | ||| | || || || ||||| || || || || |
Sbjct 15702 TCCAGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCCAGAAGGAGGCTTCCG 15643
Query 40146 CCTTTTTGTACATGTTCCATAT 40167
|||| |||||||| | ||||||
Sbjct 15642 CCTTCTTGTACATTTGCCATAT 15621
>seq1295
Length=44835
Score = 138 bits (152), Expect = 2e-27
Identities = 1172/1870 (63%), Gaps = 52/1870 (3%)
Strand=Plus/Plus
Query 68349 CGACTTT-ATTTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTAC 68407
||||||| | ||| |||| || | || || || || |||| || || | ||||||
Sbjct 16147 CGACTTTGAGTTTTTCCTGGTCAACAGTGAATTGGATCGGTGCCGAGGCCGCCATTGTAC 16206
Query 68408 GTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTA 68467
| || |||||||| || ||||| || || | |||| ||| ||||||||| || || |
Sbjct 16207 GGAGGTAGTACATGCCAGTTTTGAGGCCCAATTTCCAACCGGTGAAATGCATGCTGGTGA 16266
Query 68468 GTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAG 68527
|| | || || || |||||||| | ||| ||| ||| |||||||| |
Sbjct 16267 TCTTACCCATGGTGGGTTCTTTCATGTGAATATTTAGCGAATGAGATTGGTCGATGAATG 16326
Query 68528 CTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAA 68587
| || | || || ||||| | | |||| ||| |||||||| | ||||||
Sbjct 16327 CGCCGCGGTCAGCAGCCATCTGCACAATATGACGCTGACTGATTTCCCATACAGTCTTGT 16386
Query 68588 AAATCTGTTTGATATCATCTGGAAGGCTCGTATTT---TGAATGGATCCACCATCGGATA 68644
||| ||||| |||||||||| | ||| | |||| || || ||||| | |
Sbjct 16387 AAAGGGCTTTGAGGTCATCTGGAATGTTCGGGATGCGCTGAACAGACCCGCCATCTGCAA 16446
Query 68645 TAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGAT 68704
| || ||||| || | || ||| | | || | | | || |
Sbjct 16447 TGATGCGGTTCTTCATGTTGTCTGACCAGAGACCGCGATCGACAAGGTCCTTTAGCAACC 16506
Query 68705 GCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTAT 68764
|| || || | || || || |||| || || | |||| ||||||| || || |
Sbjct 16507 ATGGGTTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGT 16566
Query 68765 ATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTG 68824
| || || | | ||||||| |||| || || | ||| || || |||||||| || |
Sbjct 16567 ACGGCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCG 16626
Query 68825 CCACCAATAAACTATTTCTAAGACCATGTGTTATG--ATTTTATCTTTTAGATGTTTCCA 68882
|||||| || || | | || ||| | || || || | || || | |||
Sbjct 16627 CCACCAGCAATGAGTTGCGGACTCC--GTGCTGTGCAATCTTCGCCTTGAGTGAATCCCA 16684
Query 68883 ATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGC 68942
||||| ||||| | ||| || ||| | |||||||| || || || || |
Sbjct 16685 GTCCCAGAGATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAGTTCCCCTTTGCTGAC 16744
Query 68943 ATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTC 69002
| || ||| || || ||||| || || || || || ||||| || |||||
Sbjct 16745 AGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTC 16804
Query 69003 TAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACT 69062
|| || |||| |||||| || ||||| |||| | || || | |||||| ||
Sbjct 16805 CAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGCCGTCTTGCTTCGGGAGA 16864
Query 69063 ATCGAATGGATAATGTAAA-AG-AATAAATGCATCTGCCAATCC-CTGAACCCCAATACC 69119
||||| || ||| || || || || ||||| |||| || |||| ||||| ||
Sbjct 16865 GTCGAACGGC--ATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTGACACCCAAG-CC 16921
Query 69120 GATAGGTCTATGTCTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATAT 69178
|| || | || | | | ||| ||| | ||||||||| | ||||||| || ||||
Sbjct 16922 AATCGGGCGGTGGCG-TAAATTGCTCTTGCGAGCTTCTGGCACGGGATAATGGTTGATAT 16980
Query 69179 CTATAATTTTATT-AAGATTT-CGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAA 69236
| ||||| || || ||| ||| || | || || ||| || || | ||||| ||
Sbjct 16981 CGATAATCTTGTTCAAGTTTTTCGTA--ACCACCTTAGTAACTTCATGAAGTTTCTTGAA 17038
Query 69237 ATCAAATCGTCCATCTATAACAAACA--TAT-TCAGT---GCTACAGATGCTAGATTACA 69290
|| | | ||| | || | || ||| | || || | ||||| ||||| ||
Sbjct 17039 ATTGTAACTCTCATTTTCAATATCCACGTATGTGGGTAAAGCCAGGGATGCAAGATTGCA 17098
Query 69291 AACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTT 69350
|| || ||||||| || | || | || ||||| || || || || | |
Sbjct 17099 GACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCG 17158
Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410
|| || || || |||| ||| || ||| |||| || ||||| || || ||
Sbjct 17159 AATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCAGCATCCTTATAGCACATGAA 17218
Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470
|||||||| || || | |||| |||| || | | ||| | | ||| |
Sbjct 17219 GGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATAGTTTCTGCGCACGCA- 17277
Query 69471 TACGGTCTTGTAAC---GCTTCTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCA 69525
| |||| | || | ||| ||| |||||| ||| | |||| ||||| |
Sbjct 17278 --CAGTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCC--TCGAACTTT 17333
Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585
|| || | |||||| | | ||||| ||||| | ||||||||||| | |||
Sbjct 17334 TCCCCATACACATCAGCAAGGCCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTG 17393
Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCT 69644
| | || || |||||||| || | || || |||||||| || || ||| || || |
Sbjct 17394 TTCTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAA-AGGTCGCG 17452
Query 69645 GGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGA 69704
| | |||||| || || || || || ||||| || | || || |
Sbjct 17453 AGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGC 17512
Query 69705 ATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTAT 69764
|||||| || || ||||| || || | | | || || || || || || || ||||| |
Sbjct 17513 ATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGAC 17572
Query 69765 GTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATT 69824
|| | |||||||| || || || | ||||| || | | || || || | |||||
Sbjct 17573 ATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATT 17632
Query 69825 TGTTCCAGAAATATAACTTCCTCTTGCGCGAAT----ATTACTAATAGATAGACCTATTC 69880
||| ||| |||||| ||| |||||||||| ||| || | |||||||| |
Sbjct 17633 TGTGCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTAC--ATTG--AGACCTATAC 17688
Query 69881 CTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGC 69940
| || || | || ||||| | || || ||||| |||||||| || ||||| || |
Sbjct 17689 CACCAGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATAC 17748
Query 69941 TATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTT--GATGATGTATAGTTCCCGC 69998
| || || |||||| || | ||||| || || || | |||| || || ||
Sbjct 17749 TGTCCTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGATG--GTGTGCCGGC 17806
Query 69999 ATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTC 70058
| || | || || || || |||||||| | || | || | || ||||| || ||
Sbjct 17807 CATGAACAGGGTTGGTGAAGCATGAGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTC 17866
Query 70059 AATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117
|| || | || || || | | | || || || | ||| |||||||| | ||| || |
Sbjct 17867 GATTGCAGCCTCGATGTCTTCGCCG-TGTATACCCACCGCAACACGCATGATCATGTGTT 17925
Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177
| |||| ||| | |||| | ||| ||| || ||||| ||| ||||| || |
Sbjct 17926 GCGGTCTCTCTGCAATTTTCCCGTCAATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGA 17985
Query 70178 ACCCAAAATA 70187
| ||||||||
Sbjct 17986 AGCCAAAATA 17995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686894349156120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |