Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq959 82.4 1e-10 seq451 82.4 1e-10 >seq959 Length=28360 Score = 82.4 bits (90), Expect = 1e-10 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| ||||||||||| || || || ||| ||||| ||||||||||| ||||| Sbjct 16156 CCCTCATCACGGGAAATAAGCTCGTTGGAAAAGGTCAGACCGGGCATGAGACCACGCTTT 16097 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| |||| | ||| || | |||||||| || ||||| ||| || || Sbjct 16096 TTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGAAGAAAATGCCCTCTACAGCGGCGAAA 16037 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 |||| || || | |||| | | ||| | || |||| || ||||| | | Sbjct 16036 GCAACGAGACGACAGCCGAACGTCGAATTCTTATCGCTAATCCATCGCAGCGCCCAATCC 15977 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATA 122899 |||||||| | || ||||| | | | |||||| | |||| Sbjct 15976 GCCTTCTTACCGATGCATGGGATGTTGTCGATGGCGTTGAATA 15934 >seq451 Length=24497 Score = 82.4 bits (90), Expect = 1e-10 Identities = 104/140 (74%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 183606 GAGTAGATGTTGGTCAACTTGGCACCATAGCCGTTGCGACCTCC---CACAATTCTCTTC 183662 ||||| |||||||| | ||||||||||||||| |||||||| || ||| || | || Sbjct 20018 GAGTAAATGTTGGTGAGCTTGGCACCATAGCCATTGCGACCGCCAGTCAC-TTTAGCCTC 20076 Query 183663 TTTGTGTCATCATAATTTGTACTCGTAAGAAGATGCCCAAATGTAAGTTCGGGATTCCAA 183722 | ||||||| ||||| | | ||| || ||||| || || | | ||||||| | | Sbjct 20077 AT--TGTCATCGTAATTGGAAGACGTGAGGAGATGTCCGAAAATCATTTCGGGAATGTAT 20134 Query 183723 ATACCCTCTTTTTCGTGCAT 183742 ||||||||||| || || || Sbjct 20135 ATACCCTCTTTGTCATGGAT 20154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628018787776800