Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1295 188 9e-43 seq959 120 4e-22 seq444 87.8 2e-12 >seq1295 Length=44835 Score = 188 bits (208), Expect = 9e-43 Identities = 882/1378 (64%), Gaps = 23/1378 (2%) Strand=Plus/Plus Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| ||||| || || |||||| |||| ||| || | || || ||||| |||||| Sbjct 16563 GTGTACGGCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATG 16622 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 || |||| || | ||| |||| || | | ||| ||||||| | ||| Sbjct 16623 GGCGCCACCAGCAATGAGTTGCGGACTCCGTGCTGTGCAATCTTCGCCTTGAGTGAATCC 16682 Query 118314 CAGTCGTAGTTGAGCT-TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 118372 ||||| || || | ||| | | | |||||| || | || || |||| | Sbjct 16683 CAGTCCCAGA-GATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAGTTCCCCTTTGCT 16741 Query 118373 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 118432 | || || || | | ||||||||||| || |||||||| |||| || || Sbjct 16742 GACAGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGC 16801 Query 118433 CTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATT-GCCTTGGCCTCGT 118491 ||| | ||| ||||||| || || || || || || || | | |||| | ||| Sbjct 16802 CTCCAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGCCGTCTTG-CTTCGG 16860 Query 118492 CGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 118551 || || |||| | || || || |||| || || || |||||| | || Sbjct 16861 GAGAGTCGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTGACACCCAAGC 16920 Query 118552 CAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC-CACGGGATAAAAATTCCTA 118610 |||| ||||| || | | ||| ||| ||||| ||| |||||||||| || || Sbjct 16921 CAATCGGGCGGTGGCGTAAATTGCTCTTGCGAGCT-TCTGGCACGGGATAATGGTTGATA 16979 Query 118611 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 118670 ||||||| | | || | ||||| || || ||||| || | ||||||||| || | | || Sbjct 16980 TCGATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCATGAAGTTTCTTGAAA 17039 Query 118671 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 118730 | |||| | | || || || || | || | || | || || ||||| || Sbjct 17040 TTGTAACTCTCATTTTCAATATCCACGTATGTGGGTAAAGCCAGGGATGCAAGATTGCAG 17099 Query 118731 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTA 118790 |||| | |||||| |||||||||| ||||| || ||||||| ||| ||| | Sbjct 17100 ACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCGA 17159 Query 118791 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTAT 118850 ||||| || | ||| || || || || ||| |||| |||||||| || |||| | Sbjct 17160 ATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCAGCATCCTTATAGCACATGAAG 17219 Query 118851 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCAC 118909 || || || ||||||||||| | || ||| || || | ||| | || || || |||| Sbjct 17220 GGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATAGTTTCTGC-GCACGCAC 17278 Query 118910 AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 118969 ||| || | || ||||| ||||| | | |||||| || || |||| ||| || Sbjct 17279 AGTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCCTCGAACTTTTCCCC 17338 Query 118970 CACGGCCTCTGAGAGCCCTGGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCT 119028 | || | || || || || || | || || | | || |||| | || Sbjct 17339 ATACACATCAGCAAGGCCAGG-GCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCT 17397 Query 119029 CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGC 119088 ||| ||||| |||||||| | |||||||||||| ||||| |||| || || ||| | Sbjct 17398 GCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCAC 17457 Query 119089 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 119148 | ||||||| | || || || |||| || | ||| | || ||||| |||| Sbjct 17458 GGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCC 17517 Query 119149 ACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACC 119205 |||| || || || | || | | || ||| ||| | || | ||||||| Sbjct 17518 ACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACC 17577 Query 119206 TCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCC 119265 ||||||| ||| ||||||||||||| || | | || | || |||||||| | Sbjct 17578 GCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGC 17637 Query 119266 CCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCAT----ACCAATACCCCCT 119321 | | |||| ||| | || | || || | || ||| ||| ||| ||||| || Sbjct 17638 CACCAATATACGACCCTGTTGCGC-GA-AT-GCGG-TGTACATTGAGACCTATACCACCA 17693 Query 119322 GCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCA 119381 || ||||||||| ||||| | ||| || | || || || ||||| ||| Sbjct 17694 GCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCC 17753 Query 119382 CCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAG 119441 |||| | | || | ||| || | || ||| | ||||| || || |||| Sbjct 17754 TCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGATGGTGTGCCGGCCATGAAC 17813 Query 119442 AGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGAC 119500 || ||||||| || || |||| ||| | | ||||| || ||||||||| | | Sbjct 17814 AGGGTTGGTGAAGCATGAGTGAA-GTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGC 17872 Query 119501 GGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558 || |||||||| ||||| ||||| | || || ||||| | ||||| ||| ||| Sbjct 17873 AGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGT 17930 >seq959 Length=28360 Score = 120 bits (132), Expect = 4e-22 Identities = 336/506 (66%), Gaps = 15/506 (3%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| |||||||| || || || || || ||| |||||| ||||||||||| ||||| Sbjct 16156 CCCTCATCACGGGAAATAAGCTCGTTGGAAAAGGTCAGACCGGGCATGAGACCACGCTTT 16097 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | ||||||||| | || |||| ||||||||| || ||||| ||| ||||| Sbjct 16096 TTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGAAGAAAATGCCCTCTACAGCGGCGAAA 16037 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCG-GGACTTTGTATC---AAACCACTTCATCGCCCA 130209 |||| |||||| |||| || || || || |||| || ||| || |||||| Sbjct 16036 GCAACGAGACG-ACAGC---CGAACGTCGAATTCTTATCGCTAATCCATCGCAGCGCCCA 15981 Query 130210 CTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTC 130269 | |||||| || |||| || |||| | | | ||| || | || || | | | || Sbjct 15980 ATCCGCCTTCTTACCGATGCATGGGATGTTGTCGATGGCGTTGAATAGATACGTGCGTTG 15921 Query 130270 TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCAT-TT 130328 | || || ||||||| | || ||||| || || || || |||| | | Sbjct 15920 TTTCGGTTCGCTGATGTAGGTGTCGATGAGCAGAGAGTAAGTCTCAGAGTGGATATTCTC 15861 Query 130329 CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCAA 130388 ||| || | ||| | ||||||| |||| |||||| ||| || ||||| ||| | Sbjct 15860 CATCAT-GATCTGGAAGCCGTAGAAGCAGCGTGCTTCGGGTATTTGCACCTCGGCTG-AG 15803 Query 130389 AATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 130447 ||| | | || ||||| ||||| || || || | |||||||| || |||| | Sbjct 15802 AATCGCTCGACGAGGTTCTCGTTGACAATCCCGTCTGATGCCGCAAAAAAGGCGAGGACA 15743 Query 130448 TACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCTTCCAGTCGTCAAGATCCTTC 130504 | ||||| | || | || |||||| | |||||||| | | ||| || Sbjct 15742 TGAGAGATGAAGAAACGCTCGTCATCATTCAGGCGCTTGTTCCAGTCATGCAAATCTTTT 15683 Query 130505 GAGAGATCTACCTCCTCCGCAGTCCA 130530 || ||||| | |||||| || ||||| Sbjct 15682 GAAAGATCGATCTCCTCGGCCGTCCA 15657 >seq444 Length=108798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 202/301 (67%), Gaps = 15/301 (5%) Strand=Plus/Plus Query 14055 TGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGT 14114 |||| | ||||||||| |||||||| | | ||| || | || || | ||| |||| Sbjct 52333 TGATATGACGATCAAAACGACCTGGTCTCATGAGAGCTTTATCTAGAACATCTGCTCGGT 52392 Query 14115 TCGTCGCCGCGATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 | || | || | |||||||| ||| | | | | | ||||||||||||||| || | Sbjct 52393 TTGTTCCTGCCAAGACAACGACTTGCTC--CGAGGTGTTAAAGCCATCCATCTCTGTGAG 52450 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTG 14232 | |||||||| || || |||||||| || || |||| || ||||| ||| Sbjct 52451 AATTTGATTGAGAGTAGACTCTCGTTCATCGTTGCCACC---ACCAAACG-ACTGCTTTG 52506 Query 14233 C-------TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCAC 14285 | || || | ||||||||||||||| ||||| | ||| || || ||||| | Sbjct 52507 CCCTCGATTTGCCTATGGCGTCAATTTCATCTATGAAGATGATGCAAGGGGTATTTTTTC 52566 Query 14286 GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 14345 ||| | || | ||||| ||||| | || || || || ||||||||||||| Sbjct 52567 TCGCATTCTGGAATAGGTCTCGTACTCTTGACGGGCCAACGCCGACGAACATCTCCACAA 52626 Query 14346 A 14346 | Sbjct 52627 A 52627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618422189669480