Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 188 9e-43
seq959 120 4e-22
seq444 87.8 2e-12
>seq1295
Length=44835
Score = 188 bits (208), Expect = 9e-43
Identities = 882/1378 (64%), Gaps = 23/1378 (2%)
Strand=Plus/Plus
Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253
||||| ||||| || || |||||| |||| ||| || | || || ||||| ||||||
Sbjct 16563 GTGTACGGCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATG 16622
Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313
|| |||| || | ||| |||| || | | ||| ||||||| | |||
Sbjct 16623 GGCGCCACCAGCAATGAGTTGCGGACTCCGTGCTGTGCAATCTTCGCCTTGAGTGAATCC 16682
Query 118314 CAGTCGTAGTTGAGCT-TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 118372
||||| || || | ||| | | | |||||| || | || || |||| |
Sbjct 16683 CAGTCCCAGA-GATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAGTTCCCCTTTGCT 16741
Query 118373 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 118432
| || || || | | ||||||||||| || |||||||| |||| || ||
Sbjct 16742 GACAGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGC 16801
Query 118433 CTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATT-GCCTTGGCCTCGT 118491
||| | ||| ||||||| || || || || || || || | | |||| | |||
Sbjct 16802 CTCCAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGCCGTCTTG-CTTCGG 16860
Query 118492 CGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 118551
|| || |||| | || || || |||| || || || |||||| | ||
Sbjct 16861 GAGAGTCGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTGACACCCAAGC 16920
Query 118552 CAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC-CACGGGATAAAAATTCCTA 118610
|||| ||||| || | | ||| ||| ||||| ||| |||||||||| || ||
Sbjct 16921 CAATCGGGCGGTGGCGTAAATTGCTCTTGCGAGCT-TCTGGCACGGGATAATGGTTGATA 16979
Query 118611 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 118670
||||||| | | || | ||||| || || ||||| || | ||||||||| || | | ||
Sbjct 16980 TCGATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCATGAAGTTTCTTGAAA 17039
Query 118671 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 118730
| |||| | | || || || || | || | || | || || ||||| ||
Sbjct 17040 TTGTAACTCTCATTTTCAATATCCACGTATGTGGGTAAAGCCAGGGATGCAAGATTGCAG 17099
Query 118731 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTA 118790
|||| | |||||| |||||||||| ||||| || ||||||| ||| ||| |
Sbjct 17100 ACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCGA 17159
Query 118791 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTAT 118850
||||| || | ||| || || || || ||| |||| |||||||| || |||| |
Sbjct 17160 ATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCAGCATCCTTATAGCACATGAAG 17219
Query 118851 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCAC 118909
|| || || ||||||||||| | || ||| || || | ||| | || || || ||||
Sbjct 17220 GGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATAGTTTCTGC-GCACGCAC 17278
Query 118910 AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 118969
||| || | || ||||| ||||| | | |||||| || || |||| ||| ||
Sbjct 17279 AGTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCCTCGAACTTTTCCCC 17338
Query 118970 CACGGCCTCTGAGAGCCCTGGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCT 119028
| || | || || || || || | || || | | || |||| | ||
Sbjct 17339 ATACACATCAGCAAGGCCAGG-GCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCT 17397
Query 119029 CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGC 119088
||| ||||| |||||||| | |||||||||||| ||||| |||| || || ||| |
Sbjct 17398 GCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCAC 17457
Query 119089 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 119148
| ||||||| | || || || |||| || | ||| | || ||||| ||||
Sbjct 17458 GGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCC 17517
Query 119149 ACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACC 119205
|||| || || || | || | | || ||| ||| | || | |||||||
Sbjct 17518 ACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACC 17577
Query 119206 TCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCC 119265
||||||| ||| ||||||||||||| || | | || | || |||||||| |
Sbjct 17578 GCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGC 17637
Query 119266 CCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCAT----ACCAATACCCCCT 119321
| | |||| ||| | || | || || | || ||| ||| ||| ||||| ||
Sbjct 17638 CACCAATATACGACCCTGTTGCGC-GA-AT-GCGG-TGTACATTGAGACCTATACCACCA 17693
Query 119322 GCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCA 119381
|| ||||||||| ||||| | ||| || | || || || ||||| |||
Sbjct 17694 GCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCC 17753
Query 119382 CCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAG 119441
|||| | | || | ||| || | || ||| | ||||| || || ||||
Sbjct 17754 TCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGATGGTGTGCCGGCCATGAAC 17813
Query 119442 AGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGAC 119500
|| ||||||| || || |||| ||| | | ||||| || ||||||||| | |
Sbjct 17814 AGGGTTGGTGAAGCATGAGTGAA-GTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGC 17872
Query 119501 GGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558
|| |||||||| ||||| ||||| | || || ||||| | ||||| ||| |||
Sbjct 17873 AGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGT 17930
>seq959
Length=28360
Score = 120 bits (132), Expect = 4e-22
Identities = 336/506 (66%), Gaps = 15/506 (3%)
Strand=Plus/Minus
Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093
||||| |||||||| || || || || || ||| |||||| ||||||||||| |||||
Sbjct 16156 CCCTCATCACGGGAAATAAGCTCGTTGGAAAAGGTCAGACCGGGCATGAGACCACGCTTT 16097
Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153
|| | ||||||||| | || |||| ||||||||| || ||||| ||| |||||
Sbjct 16096 TTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGAAGAAAATGCCCTCTACAGCGGCGAAA 16037
Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCG-GGACTTTGTATC---AAACCACTTCATCGCCCA 130209
|||| |||||| |||| || || || || |||| || ||| || ||||||
Sbjct 16036 GCAACGAGACG-ACAGC---CGAACGTCGAATTCTTATCGCTAATCCATCGCAGCGCCCA 15981
Query 130210 CTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTC 130269
| |||||| || |||| || |||| | | | ||| || | || || | | | ||
Sbjct 15980 ATCCGCCTTCTTACCGATGCATGGGATGTTGTCGATGGCGTTGAATAGATACGTGCGTTG 15921
Query 130270 TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCAT-TT 130328
| || || ||||||| | || ||||| || || || || |||| | |
Sbjct 15920 TTTCGGTTCGCTGATGTAGGTGTCGATGAGCAGAGAGTAAGTCTCAGAGTGGATATTCTC 15861
Query 130329 CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCAA 130388
||| || | ||| | ||||||| |||| |||||| ||| || ||||| ||| |
Sbjct 15860 CATCAT-GATCTGGAAGCCGTAGAAGCAGCGTGCTTCGGGTATTTGCACCTCGGCTG-AG 15803
Query 130389 AATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 130447
||| | | || ||||| ||||| || || || | |||||||| || |||| |
Sbjct 15802 AATCGCTCGACGAGGTTCTCGTTGACAATCCCGTCTGATGCCGCAAAAAAGGCGAGGACA 15743
Query 130448 TACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCTTCCAGTCGTCAAGATCCTTC 130504
| ||||| | || | || |||||| | |||||||| | | ||| ||
Sbjct 15742 TGAGAGATGAAGAAACGCTCGTCATCATTCAGGCGCTTGTTCCAGTCATGCAAATCTTTT 15683
Query 130505 GAGAGATCTACCTCCTCCGCAGTCCA 130530
|| ||||| | |||||| || |||||
Sbjct 15682 GAAAGATCGATCTCCTCGGCCGTCCA 15657
>seq444
Length=108798
Score = 87.8 bits (96), Expect = 2e-12
Identities = 202/301 (67%), Gaps = 15/301 (5%)
Strand=Plus/Plus
Query 14055 TGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGT 14114
|||| | ||||||||| |||||||| | | ||| || | || || | ||| ||||
Sbjct 52333 TGATATGACGATCAAAACGACCTGGTCTCATGAGAGCTTTATCTAGAACATCTGCTCGGT 52392
Query 14115 TCGTCGCCGCGATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172
| || | || | |||||||| ||| | | | | | ||||||||||||||| || |
Sbjct 52393 TTGTTCCTGCCAAGACAACGACTTGCTC--CGAGGTGTTAAAGCCATCCATCTCTGTGAG 52450
Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTG 14232
| |||||||| || || |||||||| || || |||| || ||||| |||
Sbjct 52451 AATTTGATTGAGAGTAGACTCTCGTTCATCGTTGCCACC---ACCAAACG-ACTGCTTTG 52506
Query 14233 C-------TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCAC 14285
| || || | ||||||||||||||| ||||| | ||| || || ||||| |
Sbjct 52507 CCCTCGATTTGCCTATGGCGTCAATTTCATCTATGAAGATGATGCAAGGGGTATTTTTTC 52566
Query 14286 GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 14345
||| | || | ||||| ||||| | || || || || |||||||||||||
Sbjct 52567 TCGCATTCTGGAATAGGTCTCGTACTCTTGACGGGCCAACGCCGACGAACATCTCCACAA 52626
Query 14346 A 14346
|
Sbjct 52627 A 52627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618422189669480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |