Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1295 179 4e-40 seq959 111 2e-19 >seq1295 Length=44835 Score = 179 bits (198), Expect = 4e-40 Identities = 893/1391 (64%), Gaps = 41/1391 (3%) Strand=Plus/Minus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| ||||||| || || | ||||| || || |||||||| || ||| | |||| Sbjct 17922 ACATGATCATGCGTGTTGCGGTGGGTATACACGGCGAAGACATCGAGGCTGCAATCGAGA 17863 Query 104289 CATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCT 104347 | ||| || ||||| | | ||| |||| ||| || |||||||||| |||| || Sbjct 17862 CCTACAACCTCATGTCGAACAAGTAC-TTCACTCATGCTTCACCAACCCTGTTCATGGCC 17804 Query 104348 GGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 104407 || |||||| ||||| || | || ||| | || | || ||||||||| ||| Sbjct 17803 GGCACACCATCCGCCCAATTGGCTTCATGTTTCTTGATTGACATGAAGGAGGACAGTATC 17744 Query 104408 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGGTA 104465 | || || |||| ||||| | | ||||| | ||||||||| ||||| |||| Sbjct 17743 GAGGGCATTTATGACACTCTGAA--AACATGCGCCATGATCTCAAAGAATGCTGGTGGTA 17686 Query 104466 TTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTC 104525 | || | | | || | | || | || |||| | || |||||||| Sbjct 17685 TAGGTCTCAATGTACACCGCATTCGCGCAACAGGGTCGTATATTGGTGGCACAAATGGAA 17626 Query 104526 AATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATC 104585 ||| | || | | || |||||||| |||| ||| ||| ||||| ||||| ||| Sbjct 17625 CTTCAAACGGATTGGTACCTATGCTTCGTGTATACAACAACACTGCGCGGTATGTCGATC 17566 Query 104586 AAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGG 104639 ||| ||| ||||| || | | || ||||||||||||| ||||| |||| Sbjct 17565 AAGGTGGCAACAAGCGTCCC---GGTGCCTTTGCCATCTATCTTGAGCCGTGGCATGCGG 17509 Query 104640 ATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGC 104698 | || | ||||| || |||| ||||| || | || || | | |||| ||| Sbjct 17508 ACATATTCTCCTTCCTCGACCTGCGCAAGAACCATGGCAAAGAAGAAG-TCCGTGCTCGC 17450 Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 || || |||| ||| || ||||| ||||| | |||||||| | || ||| ||| || Sbjct 17449 GACCTTTTCTACGCGCTTTGGATCCCAGACTTGTTCATGAAACGGGTGGAGCAGAACAGC 17390 Query 104759 AATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGA 104817 | ||| || | | ||||| || || || ||||| || | |||| || || | Sbjct 17389 ACATGGACTTTGATGTGTCCGCACGAATGC-CCTGGCCTTGCTGATGTGTATGGGGAAAA 17331 Query 104818 GTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGC 104877 ||| || || || ||| | | ||||| || ||||| | | ||| |||| || Sbjct 17330 GTTCGAGGCTCTCTACGAACAATACGAACGCGAGGGTCGTGGTCGCGAGACTGTGCGTGC 17271 Query 104878 TGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 || | | | ||| | || || ||| || ||||||| ||||| ||||| || | |||| Sbjct 17270 -GCAGAAACTATGGTACGCAATCCTCGAGGCTCAAACGGAGACAGGTACTCCCTTCATGT 17212 Query 104937 TTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 104995 || || || | ||| || || ||| || || || || | ||| || | Sbjct 17211 GCTATAAGGATG-CTGCAAACAGAAAATCCAACCAGAAAAACCTTGGTACCATTCGCTCT 17153 Query 104996 TCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 105055 ||||| || || || || || |||| | || | | |||||| ||||| || || Sbjct 17152 TCCAACCTGTGCACTGAGATTATGGAGTACACTGCCCCTGATGAGGTCGCTGTCTGCAAT 17093 Query 105056 CTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT--GATTATG 105113 || ||||| | ||| | |||| || |||||| | || || || | || ||| Sbjct 17092 CTTGCATCCCTGGCTTTACCCACATACGTGGAT--ATTGAAAATGAGAGTTACAATTTCA 17035 Query 105114 AAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAA 105173 | ||||| || |||||||| || || || |||||| | |||| |||| |||| | Sbjct 17034 AGAAACTTCATGAAGTTACTAAGGTGGTTACGAAAAACTTGAACAAGATTATCGATATCA 16975 Query 105174 ATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 105232 | ||| ||||| ||| ||||| || ||| | | ||||| || ||||| | Sbjct 16974 ACCATTATCCCGTGCCAGA-AGCTCGCAAGAGCAATTTACGCCACCGCCCGATTGGCTTG 16916 Query 105233 GGTGTTCAG-GGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 105291 |||| |||| || || || |||| ||| || | |||| | || || || ||| Sbjct 16915 GGTG-TCAGTGGCCTGGCCGATGCTTTCCTTGCTCTTCGCATGCCGTTCGACTCTCCCGA 16857 Query 105292 AGC--GAAGG-AAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||| || || || || | | || || |||||||| ||||||| || | ||||| Sbjct 16856 AGCAAGACGGCTAAACATT---CAGATCTTCGAGACCATTTATCACGGAGCGTTGGAGGC 16800 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG-CTT 105407 | || |||| ||| ||||||||||| || | | || || || | | Sbjct 16799 CTCCTGCGAACTGGCGGAGCAACTCGGTCCATATGAGACTTACGCTGGCTCCCCTGTCAG 16740 Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGG 105466 || |||||| || |||| || ||||||| |||| |||| | || || |||||| Sbjct 16739 CA-AAGGGGAACTGCAATACGACATGTGGG-GCGTGACGCCAACCGATCTCTGGGACTGG 16682 Query 105467 GAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCA 105526 || | ||||||| || || | || | || ||| | || |||| || Sbjct 16681 GATTCACTCAAGGCGAAGATTGCACAGCACGGAGTCCGCAACTCATTGCTGGTGGCGCCC 16622 Query 105527 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 105586 ||||||||||| || || | || ||| |||| |||||||| || || || ||||| Sbjct 16621 ATGCCAACAGCGTCGACTTCGCAGATCATGGGCTTCAATGAATGTTTCGAGCCGTACACT 16562 Query 105587 ACGAACATCTA 105597 ||||||| || Sbjct 16561 TCGAACATTTA 16551 >seq959 Length=28360 Score = 111 bits (122), Expect = 2e-19 Identities = 153/210 (73%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG-CGTTCCTTTGCTGA 94805 ||||| ||||||||||| || ||| || |||| || ||| ||||| |||| Sbjct 15969 AAGAAGGCGGATTGGGCGCTGCGATGGATTAGCGATAAGAATTCGACGTTCG---GCTGT 16025 Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 94865 || ||| | || || || ||| ||||| || ||||||||| | |||||| | || Sbjct 16026 -CGTCTCGTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCAT 16084 Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925 || |||||||| ||||| ||||||||||| ||||| ||| |||||||||||||| || Sbjct 16085 TTTCTGGCTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTC 16144 Query 94926 TCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||| | ||| ||| || || Sbjct 16145 CCGTGATGAGGGCATGCACACAGACTTCGC 16174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248529650920