Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq32 199 1e-45 seq1399 174 5e-38 seq990 154 4e-32 seq1047 102 2e-16 seq1682 91.5 4e-13 >seq32 Length=30463 Score = 199 bits (220), Expect = 1e-45 Identities = 456/681 (67%), Gaps = 13/681 (2%) Strand=Plus/Minus Query 349251 ATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTG 349310 |||| || | || || |||||||| || ||||| ||| | |||||||| || | || | Sbjct 6521 ATGACCGCATCGAGATCATTGCAAACGACCAAGGCAACCGCACAACGCCGTCGTTTGTCG 6462 Query 349311 CATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATC 349370 |||| || || ||||||||| ||||||||||| | || || || || | || || | Sbjct 6461 CATTCACAGACACTGAGCGTCTGATTGGTGATGCCGCGAAGAACCAGGTCGCAATGAACC 6402 Query 349371 CAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTA 349430 || | || || ||||| ||||| |||||||| || || | | || ||| || Sbjct 6401 CACAGAACACAGTTTTCGATGCGAAGCGACTCATCGGACGGAAATTCAACGACC---CTG 6345 Query 349431 CA---CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAAC 349487 | ||| | ||| | || || || ||||| | || | | | ||| || | | | Sbjct 6344 AAGTGCAAGCAGATATGAAGCACTTCCCTTTCAAAGTAAT-CGAGAAGCAGGGCA--AGC 6288 Query 349488 CAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCAT 349547 |||| || | || || | || || || || ||| |||| || ||||| || || | Sbjct 6287 CAATCATCCAAGTCGAGTTCAAGGGAGAGCAGAAAGAATTCAGCCCAGAAGAGATCTCTT 6228 Query 349548 CAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTG 349607 | ||||| | || ||| |||| ||||||| |||| | || | || || | Sbjct 6227 CCATGGTGCTCACCAAGATGCGAGAAACTGCTGAATCATACCTCGGCGGCACTGTCAACA 6168 Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| || ||||| || || ||||| || || | || | ||||| ||||||| Sbjct 6167 ATGCTGTCATCACTGTGCCGGCATATTTCAACGACTCTCAAAGACAAGCAACCAAAGATG 6108 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| ||| || || || ||||| | | || || || || || || || ||||| | Sbjct 6107 CTGGTCTCATCGCCGGCTTGAATGTGTTGCGTATTATCAACGAGCCGACCGCCGCAGCCA 6048 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGA--CCAAGaaaaaaaTATTCTTATTTTTGATTT 349785 |||| || || || || || | | ||| | || || ||| | ||||| || || Sbjct 6047 TTGCCTACGGCCTCGACAAGAAGGTTGAAGGCGAGCGGAACGTAT--TGATTTTCGACTT 5990 Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 |||||||| ||||| ||||| || |||| || | || ||||| ||||| || || || Sbjct 5989 GGGTGGTGGCACTTTCGATGTGTCCTTACTTACCATCGAGGAGGGCATTTTCGAGGTCAA 5930 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCA 349905 | | || || ||||| || || | ||||| ||||| || || || || | ||| || Sbjct 5929 ATCCACGGCCGGTGACACGCACTTGGGTGGTGAAGACTTCGACAACCGCATGGTTAATCA 5870 Query 349906 TTTTGTTAAAGAATTTAAGCG 349926 |||||||| ||||| || || Sbjct 5869 CTTTGTTAACGAATTCAAACG 5849 Score = 138 bits (152), Expect = 3e-27 Identities = 452/696 (65%), Gaps = 11/696 (2%) Strand=Plus/Minus Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 |||| || ||||| || || ||||| | || || || | | || || || ||||| | Sbjct 5743 GAACCGCCTGTGAGCGGGCGAAGCGAACATTGTCTTCATCCGCACAGACATCCATTGAGA 5684 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 | || || || ||| |||| ||||||| | || || || |||||||| || || | Sbjct 5683 TCGACTCGCTGTATGAGGGCATTGATTTCTACACTTCCATCACCCGTGCTCGCTTCGAGG 5624 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | || || |||||| || || | |||||||| || || ||| || | || | Sbjct 5623 AGTTGTGCCAGGATCTCTTCCGATCCACAATGGAGCCAGTCGAACGTGTCCTCCGTGACG 5564 Query 350157 CAAAAATGTCCAAAAA-TCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 | || || ||| || | | | ||| | || | || |||||||| || |||||| Sbjct 5563 CCAAGATCGACAAGTCCTCCG-TGCACGAAATCGTACTGGTCGGTGGTTCAACCCGTATT 5505 Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATT 350275 || || |||| || | |||| || || || |||||||| || || | || || Sbjct 5504 CCGAAGATTCAGAAGATGGTATCCGACTTCTTCAATGGCAAGGAGCCCAACAAGTCCATC 5445 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAAT 350335 |||||||| || |||||||| || || || ||||||||||| |||| | ||||| | Sbjct 5444 AATCCAGACGAGGCTGTTGCCTACGGCGCAGCTGTTCAGGCCGCTATCCTTTCTGGTGAC 5385 Query 350336 A-----AG-AGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTT 350389 | || | || | | ||| |||| | || || ||||| || ||| | || | Sbjct 5384 ACCTCGAGCAAGTCAACCAATGA-GATC--CTGCTCCTCGATGTTACGCCATTGTCTGTC 5328 Query 350390 GGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCT 350449 || | || || |||| | || ||||| || || | || | ||| | || Sbjct 5327 GGTATTGAGACGGCTGGCGGTGTGATGACCCCGCTGATCAAGCGCAACACCACTATCCCG 5268 Query 350450 ACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAA 350509 || || || || | || || ||||| | || || || || | || || ||| Sbjct 5267 ACGAAGAAATCTGAGGTGTTCTCCACATTCTCCGACAACCAACCGGGTGTGCTCATCCAA 5208 Query 350510 GTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTA 350569 || | ||| ||||| ||||||||||| ||||| || ||| || || ||||| || Sbjct 5207 GTCTATGAGGGTGAGCGTGCTCGCACCAAAGACAACAATTTGCTCGGCAAATTTGAGCTC 5148 Query 350570 AGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGAT 350629 | || || ||||| || | || || ||||||||||| || | ||||| || ||| Sbjct 5147 ACTGGCATCCCACCTGCTCCGCGTGGTGTACCTCAGATTGAGGTTACCTTCGACATGGAT 5088 Query 350630 TCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAA 350665 | |||||||| | || || | || ||||| ||| Sbjct 5087 GCCAATGGTATCATGAACGTCTCTGCTGTTGAGAAA 5052 >seq1399 Length=32242 Score = 174 bits (192), Expect = 5e-38 Identities = 258/364 (71%), Gaps = 5/364 (1%) Strand=Plus/Minus Query 349527 TTTTAC--CCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGC 349584 |||||| |||||||| |||| |||||| |||| | || ||||||||| |||| || || Sbjct 11577 TTTTACGCCCGAAGAAGTTTCTTCAATGATTTTGGGCAAGATGAAGGAAGTTGCAGAGGC 11518 Query 349585 ATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGC 349644 |||| |||| || | || || |||| || |||| || || || ||||| || || || Sbjct 11517 ATATCTAGGCGAGAAGGTCACAAATGCCGTCGTTACCGTTCCGGCATATTTCAACGACGC 11458 Query 349645 CCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGAT 349704 || ||| |||| ||||| ||||| || | ||||| ||| | || || ||| |||| | Sbjct 11457 ACAACGTGCTGCGACAAAGGATGCAGGTACTATTGCTGGGCTTAACGTGCTACGAATCGT 11398 Query 349705 TAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaa 349764 || ||||| || ||||| ||| | ||||| || | || || | | || |||||| Sbjct 11397 CAACGAACCGACAGCTGCCGCACTAGCATACGGATTGGACAAGACG---GATCAAGAACG 11341 Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 | || | | | ||| | ||||| ||||| |||||||| || | | || | || Sbjct 11340 CCAAATCGTCGTGTACGATCTCGGTGGCGGTACCTTTGATGTTTCCGTCTTGACGGTCGA 11281 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 | || | ||||| || | |||||||||||||| || ||||| || || ||||| || Sbjct 11280 TCAAGGCGTGTTTGAGGTGCAGGCAACTGCTGGTGACACTCATCTCGGCGGTGAAGACTT 11221 Query 349885 TGAT 349888 |||| Sbjct 11220 TGAT 11217 >seq990 Length=11377 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| || || ||| ||||||||||| || | Sbjct 10564 TTTGCATACCACCACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGT 10505 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || ||||| ||||| ||||| ||||| || || | || ||||| | Sbjct 10504 AGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGT 10445 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || |||||||| || ||||| | ||| || || || || | || || | Sbjct 10444 CCGGAGGGATACCCTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACG 10385 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| |||||||| | || || ||||| ||||| || ||||| |||||||| Sbjct 10384 ACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || | ||| || || ||||| || || || Sbjct 10788 CATACCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTC 10729 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || |||| ||||||||| ||||| || || || |||||||| | ||| || ||||| Sbjct 10728 TGACAACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGG 10669 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || ||||| || ||||| || | || || || || |||| |||| || ||| Sbjct 10668 CGGAATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTC 10609 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||| ||||| || ||||| ||||| || ||||| Sbjct 10608 GACTTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558 Score = 127 bits (140), Expect = 6e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||||||||| || ||| |||||||| || || || Sbjct 10332 CATACCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTC 10273 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || |||||||| ||||| || || || ||||| || ||||||||||| || Sbjct 10272 GCTCAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGG 10213 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 ||| || ||||| || || ||||| || ||| || |||||||| |||| || || | | Sbjct 10212 AGGGATACCTTCCTTGTCTTGAATCTT-GCTCTTGACATTATCGATCGTGTCCGACGACT 10154 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 | || || || || | ||||| ||||| | ||| Sbjct 10153 CGACCTCGAGAGTGATGGTCTTGCCGGTGACTGT 10120 >seq1047 Length=44052 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| || | ||||| ||||||||||| ||| || |||||||||||||| || Sbjct 5376 CCACCACGCAAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAG 5435 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| || || || || || |||||||| ||||| ||||| || || || Sbjct 5436 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG 5495 Query 140631 ATTCCTTCTTTATC 140644 || || ||||| || Sbjct 5496 ATACCCTCTTTGTC 5509 >seq1682 Length=82147 Score = 91.5 bits (100), Expect = 4e-13 Identities = 297/453 (66%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 || || || |||||||| |||||| || | ||||| || | || || ||||| || Sbjct 29576 GCCACGAAGGATGCTGGTGCCATTGCTGGCCTCAATGTGCTCCGCATCATCAATGAGCCT 29517 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGA-GT--GACCAAGaaaaaaaTATT 349771 || ||||| || ||||| || || || | | || || | || || | Sbjct 29516 ACCGCTGCGGCTATTGCGTACGGTCTCGGCGCCGGCAAGTCCGATAAGGAGCGCAACGTC 29457 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || | ||| | |||||||| ||||| ||||| || || || || ||| || Sbjct 29456 CTGATCTACGATCTTGGTGGTGGCACTTTCGATGTCTCGCTTCTGCATATTCAAGGAGGC 29397 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT--- 349888 | ||| || || || ||||||||||| || || |||||||| | || |||||| Sbjct 29396 GTGTTTACTGTAAAGGCTACTGCTGGTGACACTCACCTTGGTGGGCAGGACTTTGATACC 29337 Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGG 349947 || | ||||| |||||| || ||||| | || |||| | || | || || Sbjct 29336 AACCTTCTCG---AGCATTTCAAGAAGGAATTCCAACG-CAAGACCAAGAAAGACATCTC 29281 Query 349948 AGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTT 350007 || |||| |||| |||| ||||| |||| || || || ||||| |||||| || | Sbjct 29280 TAATGATCCCCGAGCGCTGCGCCGCCTGCGAACAGCCTGCGAGCGTGCCAAGCGTACCCT 29221 Query 350008 ATCATCTAC--TACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTC 350065 || | || ||| || || || | |||||||| || || |||||| ||||||| Sbjct 29220 CTC--CAACGGTACTCAGACTACTGTCGAAATTGACTCACTGTACGATGGCGAAGATTTT 29163 Query 350066 TTTTCATCTATTACACGTGCTCGGTTTGAAGAA 350098 || |||||| || || | ||||||||| Sbjct 29162 AACGCAAGTATTACTCGCGCAAGATTTGAAGAA 29130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515221725906449