Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq32 199 1e-45
seq1399 174 5e-38
seq990 154 4e-32
seq1047 102 2e-16
seq1682 91.5 4e-13
>seq32
Length=30463
Score = 199 bits (220), Expect = 1e-45
Identities = 456/681 (67%), Gaps = 13/681 (2%)
Strand=Plus/Minus
Query 349251 ATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTG 349310
|||| || | || || |||||||| || ||||| ||| | |||||||| || | || |
Sbjct 6521 ATGACCGCATCGAGATCATTGCAAACGACCAAGGCAACCGCACAACGCCGTCGTTTGTCG 6462
Query 349311 CATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATC 349370
|||| || || ||||||||| ||||||||||| | || || || || | || || |
Sbjct 6461 CATTCACAGACACTGAGCGTCTGATTGGTGATGCCGCGAAGAACCAGGTCGCAATGAACC 6402
Query 349371 CAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTA 349430
|| | || || ||||| ||||| |||||||| || || | | || ||| ||
Sbjct 6401 CACAGAACACAGTTTTCGATGCGAAGCGACTCATCGGACGGAAATTCAACGACC---CTG 6345
Query 349431 CA---CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAAC 349487
| ||| | ||| | || || || ||||| | || | | | ||| || | | |
Sbjct 6344 AAGTGCAAGCAGATATGAAGCACTTCCCTTTCAAAGTAAT-CGAGAAGCAGGGCA--AGC 6288
Query 349488 CAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCAT 349547
|||| || | || || | || || || || ||| |||| || ||||| || || |
Sbjct 6287 CAATCATCCAAGTCGAGTTCAAGGGAGAGCAGAAAGAATTCAGCCCAGAAGAGATCTCTT 6228
Query 349548 CAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTG 349607
| ||||| | || ||| |||| ||||||| |||| | || | || || |
Sbjct 6227 CCATGGTGCTCACCAAGATGCGAGAAACTGCTGAATCATACCTCGGCGGCACTGTCAACA 6168
Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667
||||||| || ||||| || || ||||| || || | || | ||||| |||||||
Sbjct 6167 ATGCTGTCATCACTGTGCCGGCATATTTCAACGACTCTCAAAGACAAGCAACCAAAGATG 6108
Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727
|||| ||| || || || ||||| | | || || || || || || || ||||| |
Sbjct 6107 CTGGTCTCATCGCCGGCTTGAATGTGTTGCGTATTATCAACGAGCCGACCGCCGCAGCCA 6048
Query 349728 TTGCATATGGGCTTGATAAAATGAGTGA--CCAAGaaaaaaaTATTCTTATTTTTGATTT 349785
|||| || || || || || | | ||| | || || ||| | ||||| || ||
Sbjct 6047 TTGCCTACGGCCTCGACAAGAAGGTTGAAGGCGAGCGGAACGTAT--TGATTTTCGACTT 5990
Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845
|||||||| ||||| ||||| || |||| || | || ||||| ||||| || || ||
Sbjct 5989 GGGTGGTGGCACTTTCGATGTGTCCTTACTTACCATCGAGGAGGGCATTTTCGAGGTCAA 5930
Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCA 349905
| | || || ||||| || || | ||||| ||||| || || || || | ||| ||
Sbjct 5929 ATCCACGGCCGGTGACACGCACTTGGGTGGTGAAGACTTCGACAACCGCATGGTTAATCA 5870
Query 349906 TTTTGTTAAAGAATTTAAGCG 349926
|||||||| ||||| || ||
Sbjct 5869 CTTTGTTAACGAATTCAAACG 5849
Score = 138 bits (152), Expect = 3e-27
Identities = 452/696 (65%), Gaps = 11/696 (2%)
Strand=Plus/Minus
Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036
|||| || ||||| || || ||||| | || || || | | || || || ||||| |
Sbjct 5743 GAACCGCCTGTGAGCGGGCGAAGCGAACATTGTCTTCATCCGCACAGACATCCATTGAGA 5684
Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096
| || || || ||| |||| ||||||| | || || || |||||||| || || |
Sbjct 5683 TCGACTCGCTGTATGAGGGCATTGATTTCTACACTTCCATCACCCGTGCTCGCTTCGAGG 5624
Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156
| || || |||||| || || | |||||||| || || ||| || | || |
Sbjct 5623 AGTTGTGCCAGGATCTCTTCCGATCCACAATGGAGCCAGTCGAACGTGTCCTCCGTGACG 5564
Query 350157 CAAAAATGTCCAAAAA-TCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215
| || || ||| || | | | ||| | || | || |||||||| || ||||||
Sbjct 5563 CCAAGATCGACAAGTCCTCCG-TGCACGAAATCGTACTGGTCGGTGGTTCAACCCGTATT 5505
Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATT 350275
|| || |||| || | |||| || || || |||||||| || || | || ||
Sbjct 5504 CCGAAGATTCAGAAGATGGTATCCGACTTCTTCAATGGCAAGGAGCCCAACAAGTCCATC 5445
Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAAT 350335
|||||||| || |||||||| || || || ||||||||||| |||| | ||||| |
Sbjct 5444 AATCCAGACGAGGCTGTTGCCTACGGCGCAGCTGTTCAGGCCGCTATCCTTTCTGGTGAC 5385
Query 350336 A-----AG-AGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTT 350389
| || | || | | ||| |||| | || || ||||| || ||| | || |
Sbjct 5384 ACCTCGAGCAAGTCAACCAATGA-GATC--CTGCTCCTCGATGTTACGCCATTGTCTGTC 5328
Query 350390 GGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCT 350449
|| | || || |||| | || ||||| || || | || | ||| | ||
Sbjct 5327 GGTATTGAGACGGCTGGCGGTGTGATGACCCCGCTGATCAAGCGCAACACCACTATCCCG 5268
Query 350450 ACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAA 350509
|| || || || | || || ||||| | || || || || | || || |||
Sbjct 5267 ACGAAGAAATCTGAGGTGTTCTCCACATTCTCCGACAACCAACCGGGTGTGCTCATCCAA 5208
Query 350510 GTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTA 350569
|| | ||| ||||| ||||||||||| ||||| || ||| || || ||||| ||
Sbjct 5207 GTCTATGAGGGTGAGCGTGCTCGCACCAAAGACAACAATTTGCTCGGCAAATTTGAGCTC 5148
Query 350570 AGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGAT 350629
| || || ||||| || | || || ||||||||||| || | ||||| || |||
Sbjct 5147 ACTGGCATCCCACCTGCTCCGCGTGGTGTACCTCAGATTGAGGTTACCTTCGACATGGAT 5088
Query 350630 TCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAA 350665
| |||||||| | || || | || ||||| |||
Sbjct 5087 GCCAATGGTATCATGAACGTCTCTGCTGTTGAGAAA 5052
>seq1399
Length=32242
Score = 174 bits (192), Expect = 5e-38
Identities = 258/364 (71%), Gaps = 5/364 (1%)
Strand=Plus/Minus
Query 349527 TTTTAC--CCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGC 349584
|||||| |||||||| |||| |||||| |||| | || ||||||||| |||| || ||
Sbjct 11577 TTTTACGCCCGAAGAAGTTTCTTCAATGATTTTGGGCAAGATGAAGGAAGTTGCAGAGGC 11518
Query 349585 ATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGC 349644
|||| |||| || | || || |||| || |||| || || || ||||| || || ||
Sbjct 11517 ATATCTAGGCGAGAAGGTCACAAATGCCGTCGTTACCGTTCCGGCATATTTCAACGACGC 11458
Query 349645 CCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGAT 349704
|| ||| |||| ||||| ||||| || | ||||| ||| | || || ||| |||| |
Sbjct 11457 ACAACGTGCTGCGACAAAGGATGCAGGTACTATTGCTGGGCTTAACGTGCTACGAATCGT 11398
Query 349705 TAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaa 349764
|| ||||| || ||||| ||| | ||||| || | || || | | || ||||||
Sbjct 11397 CAACGAACCGACAGCTGCCGCACTAGCATACGGATTGGACAAGACG---GATCAAGAACG 11341
Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824
| || | | | ||| | ||||| ||||| |||||||| || | | || | ||
Sbjct 11340 CCAAATCGTCGTGTACGATCTCGGTGGCGGTACCTTTGATGTTTCCGTCTTGACGGTCGA 11281
Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884
| || | ||||| || | |||||||||||||| || ||||| || || ||||| ||
Sbjct 11280 TCAAGGCGTGTTTGAGGTGCAGGCAACTGCTGGTGACACTCATCTCGGCGGTGAAGACTT 11221
Query 349885 TGAT 349888
||||
Sbjct 11220 TGAT 11217
>seq990
Length=11377
Score = 154 bits (170), Expect = 4e-32
Identities = 175/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || ||||| || || ||| ||||||||||| || |
Sbjct 10564 TTTGCATACCACCACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGT 10505
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| ||||| | || || ||||| ||||| ||||| ||||| || || | || ||||| |
Sbjct 10504 AGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGT 10445
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| ||||| || || |||||||| || ||||| | ||| || || || || | || || |
Sbjct 10444 CCGGAGGGATACCCTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACG 10385
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| |||||||| | || || ||||| ||||| || ||||| ||||||||
Sbjct 10384 ACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330
Score = 138 bits (152), Expect = 3e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || | ||| || || ||||| || || ||
Sbjct 10788 CATACCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTC 10729
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| || |||| ||||||||| ||||| || || || |||||||| | ||| || |||||
Sbjct 10728 TGACAACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGG 10669
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || ||||| || ||||| || | || || || || |||| |||| || |||
Sbjct 10668 CGGAATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTC 10609
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || | ||||| ||||| || ||||| ||||| || |||||
Sbjct 10608 GACTTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558
Score = 127 bits (140), Expect = 6e-24
Identities = 158/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || ||||||||||| || ||| |||||||| || || ||
Sbjct 10332 CATACCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTC 10273
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || |||||||| ||||| || || || ||||| || ||||||||||| ||
Sbjct 10272 GCTCAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGG 10213
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
||| || ||||| || || ||||| || ||| || |||||||| |||| || || | |
Sbjct 10212 AGGGATACCTTCCTTGTCTTGAATCTT-GCTCTTGACATTATCGATCGTGTCCGACGACT 10154
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719
| || || || || | ||||| ||||| | |||
Sbjct 10153 CGACCTCGAGAGTGATGGTCTTGCCGGTGACTGT 10120
>seq1047
Length=44052
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| || | ||||| ||||||||||| ||| || |||||||||||||| ||
Sbjct 5376 CCACCACGCAAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAG 5435
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| || || ||||| || || || || || |||||||| ||||| ||||| || || ||
Sbjct 5436 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG 5495
Query 140631 ATTCCTTCTTTATC 140644
|| || ||||| ||
Sbjct 5496 ATACCCTCTTTGTC 5509
>seq1682
Length=82147
Score = 91.5 bits (100), Expect = 4e-13
Identities = 297/453 (66%), Gaps = 15/453 (3%)
Strand=Plus/Minus
Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714
|| || || |||||||| |||||| || | ||||| || | || || ||||| ||
Sbjct 29576 GCCACGAAGGATGCTGGTGCCATTGCTGGCCTCAATGTGCTCCGCATCATCAATGAGCCT 29517
Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGA-GT--GACCAAGaaaaaaaTATT 349771
|| ||||| || ||||| || || || | | || || | || || |
Sbjct 29516 ACCGCTGCGGCTATTGCGTACGGTCTCGGCGCCGGCAAGTCCGATAAGGAGCGCAACGTC 29457
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
|| || | ||| | |||||||| ||||| ||||| || || || || ||| ||
Sbjct 29456 CTGATCTACGATCTTGGTGGTGGCACTTTCGATGTCTCGCTTCTGCATATTCAAGGAGGC 29397
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT--- 349888
| ||| || || || ||||||||||| || || |||||||| | || ||||||
Sbjct 29396 GTGTTTACTGTAAAGGCTACTGCTGGTGACACTCACCTTGGTGGGCAGGACTTTGATACC 29337
Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGG 349947
|| | ||||| |||||| || ||||| | || |||| | || | || ||
Sbjct 29336 AACCTTCTCG---AGCATTTCAAGAAGGAATTCCAACG-CAAGACCAAGAAAGACATCTC 29281
Query 349948 AGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTT 350007
|| |||| |||| |||| ||||| |||| || || || ||||| |||||| || |
Sbjct 29280 TAATGATCCCCGAGCGCTGCGCCGCCTGCGAACAGCCTGCGAGCGTGCCAAGCGTACCCT 29221
Query 350008 ATCATCTAC--TACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTC 350065
|| | || ||| || || || | |||||||| || || |||||| |||||||
Sbjct 29220 CTC--CAACGGTACTCAGACTACTGTCGAAATTGACTCACTGTACGATGGCGAAGATTTT 29163
Query 350066 TTTTCATCTATTACACGTGCTCGGTTTGAAGAA 350098
|| |||||| || || | |||||||||
Sbjct 29162 AACGCAAGTATTACTCGCGCAAGATTTGAAGAA 29130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515221725906449
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