Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1295 224 1e-53 seq959 129 6e-25 >seq1295 Length=44835 Score = 224 bits (248), Expect = 1e-53 Identities = 911/1406 (65%), Gaps = 36/1406 (3%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 ||||||||| || || || || ||| ||||| | ||||||||||||||| || Sbjct 16523 GAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACGGCTCGAAACATTC 16582 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 ||| ||||||||||| | ||||| || || |||||||| || ||||| | || || Sbjct 16583 ATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCACCAGCAATGAGTT 16642 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680 || | || ||| |||| |||| || | |||||| | || | | Sbjct 16643 GCGGACTCCGTGCTGTGCAATCTTCGCCTTGAGTGAATCCCAGTCCCAGAGATCGGTTGG 16702 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCC-GGCGACCCCTTGAACG 78739 || | ||||||||||| ||| || | |||| | | | || || || | | | Sbjct 16703 CGTCACGCCCCACATGTCGTATTGCAGT-TCCCCTTTGCTGACAGGGGAGCCAGCGTAAG 16761 Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACA 78799 |||| || | || | || || |||||||| || | || || |||| || | Sbjct 16762 TCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTCCAACGCTCCGTGATAAA 16821 Query 78800 CAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCC-- 78857 | ||||||||| |||| ||| | || | || |||||||| | || Sbjct 16822 TGGTCTCGAAGATCTGAATGTTTAGCCGTCTTGCTTCGGGAGAGTCGAACGGCATGCGAA 16881 Query 78858 GAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCAT 78917 ||||| | ||| ||||||||||||| ||| || | | ||||| |||||||| | Sbjct 16882 GAGCA--AGGAAAGCATCGGCCAGGCCACTGACACCCAAGCCAATCGGGCGGTGGCGTAA 16939 Query 78918 GTTGCTCTTTCGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGT 78976 |||||||| || || | | | |||| ||| ||| |||||| | ||||| || Sbjct 16940 ATTGCTCTTGCGAGCTTC-TGGCACGGGATAATGGTTGATATCGATAATCTTGTTCAAGT 16998 Query 78977 TACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAA---TGATTTCCTT 79033 | ||| || ||| ||| || || | | ||| ||||| || | |||| | Sbjct 16999 TTTTCGTAACCACCTTAGTAACTTCATGAAGTTTCTTGAAATTGTAACTCTCATTTTCAA 17058 Query 79034 TG---ATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGC 79090 | | | | || |||| ||| ||||| || ||||| || || ||| || ||| Sbjct 17059 TATCCACGTATGTGGGTAAAGCCAGGGATGCAAGATTGCAGACAGCGACCTCATCAGGGG 17118 Query 79091 TAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCT 79150 || ||| || || || ||||||| || || || ||||| || | ||| |||| Sbjct 17119 CAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCGAATGGTACCAAGGTTTTTCT 17178 Query 79151 GGTTGC-TCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACC 79209 ||||| | |||| || ||| | ||||| ||||||||| | || || || ||||| Sbjct 17179 GGTTGGATTTTCTGTTTGCAG-CATCCTTATAGCACATGAAGGGAGTACCTGTCTCCGTT 17237 Query 79210 TGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTAC-CGACC 79268 ||| || ||| | ||| ||| | | | | || || ||| || | | | ||||| Sbjct 17238 TGAGCCTCGAGGATTGCGTACCATAGTTTCTGCGCACGCACAGTCT-CGCGACCACGACC 17296 Query 79269 CTGTGCGA-CGTAC-GTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGG 79326 || ||| |||| || || || | | | ||| |||||||| ||||| | ||| Sbjct 17297 CTC-GCGTTCGTATTGTTCG-TAGAGAGCCTCGAACTTTTCCCCATACACATCAGCAAGG 17354 Query 79327 CCCGGGCACTCGTGCGGGCACATCAGGTGCCA-GTCCTCGTCCTTCTCAACCTTCTCCAT 79385 || ||||| |||||||| ||||||| ||| || || || || ||| ||| | ||| Sbjct 17355 CCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCT-GTTCTGCTCCACCCGTTTCAT 17413 Query 79386 GAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCC 79445 ||| | ||| |||||||| || || ||| |||||||| ||| | || || | ||| Sbjct 17414 GAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCACGGACTTCTTCTTTGCC 17473 Query 79446 CTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGAT 79505 |||||| ||||| ||||| ||| | ||||| || ||||||||||| |||||||| Sbjct 17474 ATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGAT 17533 Query 79506 GGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAA 79565 ||| || | ||| |||||| ||| || || | ||| ||||| || ||||||||| | Sbjct 17534 GGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTA 17593 Query 79566 AACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACC 79625 || || ||||| || || | |||| | || || || || || | || Sbjct 17594 TACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCC 17653 Query 79626 GCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCG 79684 | || |||||| | | | | || || || || || | ||| ||||| | Sbjct 17654 TGTTGCGCGAATG-CGGTGTACATTGAGACCTATACCACCAGCATTCTTTGAGATCATGG 17712 Query 79685 CGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGA 79744 |||| || || || || || ||||||||||| ||| |||||||| | | || || Sbjct 17713 CGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGA 17772 Query 79745 AGCAGCTCGACATCTGTG-GGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGC 79803 | || | || || | || || | || ||||| |||| ||||| || | || || Sbjct 17773 AACATGAAGCCAATTGGGCGGATGGT-GTGCCGGCCATGAACAGGGTTGGTGAAGCATGA 17831 Query 79804 GTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC-CTTGACGCGCGGGAGGTCGTCGCC 79862 |||||| |||| | ||| || | ||| ||||| ||| || | || ||| ||||| Sbjct 17832 GTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGC-CTCGATGTCTTCGCC 17890 Query 79863 GTGGATGCCGACCGCGACGCGCATGA 79888 ||| || || ||||| || ||||||| Sbjct 17891 GTGTATACCCACCGCAACACGCATGA 17916 Score = 206 bits (228), Expect = 3e-48 Identities = 1109/1743 (64%), Gaps = 73/1743 (4%) Strand=Plus/Minus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGC----GAGACA 19171 ||||||| || ||||| || || || ||||| ||| || ||| | || ||||| Sbjct 17916 TCATGCGTGTTGCGGTGGGTATACACGGCGAAGACATC----GAGGCTGCAATCGAGACC 17861 Query 19172 TACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGT 19231 ||| |||| ||| | |||| |||||| || || | || ||||| |||| ||||| Sbjct 17860 TACAACCTCATGTCGAACAAGTACTTCACTCATGCTTCACCAACCCTGTTCATGGCCGGC 17801 Query 19232 ACGAACAACC-CGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGA 19290 || | || || | || || | |||||| | | | |||||||| ||||| || || Sbjct 17800 AC-ACCATCCGCCCAATTGGCTTCATGTTTCTTGATTGACATGAAGGAGGACAGTATCGA 17742 Query 19291 GGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||||| || || || || || ||||| ||||| ||| | || ||||| || Sbjct 17741 GGGCATTTATGACACTCTGAAAACATGCGCCATGATCTCAAAGAATGCTGGTGGTATAGG 17682 Query 19351 GATC------CACTGC--TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402 || ||| || ||| | | || || ||| | | ||| || || Sbjct 17681 TCTCAATGTACACCGCATTCGCGCAACAGG----GTCGTATA----TTGGTGGCACAAAT 17630 Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462 ||| | |||| | || || ||||| || || | ||||||||| || |||| ||| Sbjct 17629 GGAACTTCAAACGGATTGGTACCTATGCTTCGTGTATACAACAACACTGCGCGGTATGTC 17570 Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522 | || || ||| ||| || || | || |||||||| || ||||| ||||| ||| Sbjct 17569 GATCAAGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGCCGTGGCATGCG 17510 Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582 ||| | | |||||||| |||||| |||||| || | || || | || |||| Sbjct 17509 GACATATTCTCCTTCCTCGACCTGCGCAAGAACCATGGCAAAGAAGAAGTCCGTGCTCGC 17450 Query 19583 GACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGA 19641 ||||| ||| ||| ||| ||||| || ||| | |||||| | ||| ||| || || Sbjct 17449 GACCTTTTCTACGCGCTT-TGGATCCCAGACTTGTTCATGAAACGGGTGGAGCAGAACAG 17391 Query 19642 AGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGC 19701 |||| ||||||| |||||||||||||||||||| | || || || || || Sbjct 17390 CACATGGACTTTGATGTGTCCGCACGAATGCCCTGGCCTTGCTGATGTGTATGGGGAAAA 17331 Query 19702 GTTCAATGAGTTGTACCGGAC-TTACGTAGCCCAGGGCCG-GTTCAAGAAGGTGGTCCGG 19759 |||| | | | || || || |||| | | |||| || | || | || || || Sbjct 17330 GTTCGAGGCTCTCTA-CGAACAATACGAACGCGAGGGTCGTGGTCGCG-AGACTGTGCGT 17273 Query 19760 GCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATG 19819 || | | | | ||| || ||||| | || ||||| || || || | |||| Sbjct 17272 GCGCAGAAACTATGGTACGCAATCCTCGAGGCTCAAACGGAGACAGGTACTCCCTTCATG 17213 Query 19820 TGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCG 19879 ||||| ||||| || || ||| || || || ||||| ||| | || | || || Sbjct 17212 TGCTATAAGGATGCTGCAAACAGAAAATCCAACCAGAAAAACCTTGGTACCATTCGCTCT 17153 Query 19880 TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAAT 19939 ||||||||||| ||||| || |||||| | || || ||| || || || ||| Sbjct 17152 TCCAACCTGTGCACTGAGATTATGGAGTACACTGCCCCTGATGAGGTCGCTGTCTGCAAT 17093 Query 19940 CTGGCGTCCCTGTGCCTGCCGACTTTCGTCAA-----GGCCTCCTCCTT-CGACTTTGCC 19993 || || |||||| | || || | ||| | | || | | || Sbjct 17092 CTTGCATCCCTGGCTTTACCCACATACGTGGATATTGAAAATGAGAGTTACAATTTCAAG 17033 Query 19994 AAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAAC 20053 ||| | | || || || ||| || ||| || |||| | |||||| ||| Sbjct 17032 AAACTTCATGAAGTTACTAAGGTGGTTACGAAAAACTTGAACAAGATTATCGATATCAAC 16973 Query 20054 TTTTA-CCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGG 20112 ||| |||| | | | || |||||| ||| | |||||||| ||||| | | || Sbjct 16972 CATTATCCCGTGCCA-GAAGCTCGCAAGAGCAATTTACGCCACCGCCCGATTGGCTTGGG 16914 Query 20113 CGTCCAGGGCCTGGCCGACGTTTTCATGATGCTC--GGCCTCTCATTCGACGATCCCAAG 20170 ||| ||||||||||| | |||| | ||||| || | | |||||| |||| | Sbjct 16913 TGTCAGTGGCCTGGCCGATGCTTTCCT--TGCTCTTCGCATGCCGTTCGACTCTCCCGAA 16856 Query 20171 GCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCG 20230 || | ||| |||| ||||||||| || | || |||| || | || || Sbjct 16855 GCAAGACGGCTAAACATTCAGATCTTCGAGACCATTTATCACGGAGCGTTGGAGGCCTCC 16796 Query 20231 TGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG-CGTCCGA 20289 |||||||| || | | ||| || || ||||| | | || || || | | | | Sbjct 16795 TGCGAACTGGCGGAGCAACTCGGTCCATATGAGACTTACGCTGGCTCCCCTGTCAGCAAA 16736 Query 20290 GGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC------GC 20343 ||| | || || |||||||||||||| || | || | ||| | | Sbjct 16735 GGGGA-ACTGCAATACGACATGTGGGGCGTGACGCCAACCGATCTCTGGGACTGGGATTC 16677 Query 20344 CCTCAAGGTTGAGAT--CA-AGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCAT 20400 ||||||| |||| || || ||||| | |||||||| ||||| || |||||||| Sbjct 16676 ACTCAAGGCGAAGATTGCACAG---CACGGAGTCCGCAACTCATTGCTGGTGGCGCCCAT 16620 Query 20401 GCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGAC 20460 ||| || || ||||| | ||||||||||| ||| || ||||||||||||||| | Sbjct 16619 GCCAACAGCGTCGACTTCGCAGATCATGGGCTTCAATGAATGTTTCGAGCCGTACACTTC 16560 Query 20461 CAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGT 20520 ||||| ||| |||||| || || || |||||| |||| || | | |||| Sbjct 16559 GAACATTTACAGTCGTCGTGTTCTAGCTGGCGAGTTCCAGGTGGTCAA----CCCATGGT 16504 Query 20521 CCGCGA------CTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGT 20574 || | |||| | | || | | ||||| ||| || ||||| || | Sbjct 16503 -TGCTAAAGGACCTTGTCG-ATCGCGGTCTCTGGTCAGACAACATGAAGAACCGCATCAT 16446 Query 20575 CCGAGCCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTCAAGGACATTTA 20631 || |||||| || ||| |||| | | || || | ||||||| | | |||| Sbjct 16445 TGCAGATGGCGGGTCTGTTCAGCGCATCCCGAACATTCCAGATGACCTCAAAGCCCTTTA 16386 Query 20632 CAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGC 20691 || ||| |||||||||||| ||| || | | ||||| || || |||||||| Sbjct 16385 CAAGACTGTATGGGAAATCAGTCAGCGTCATATTGTGCAGATGGCTGCTGACCGCGGCGC 16326 Query 20692 CTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCT 20751 | ||||||||| || || ||||| ||| | |||| | | || | | ||| ||| | Sbjct 16325 ATTCATCGACCAATCTCATTCGCTAAATATTCACATGAAAGAACCCACCATGGGTAAGAT 16266 Query 20752 GAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCG 20811 | | ||||||| | ||| ||| | ||| ||||| || ||||||||||| || || Sbjct 16265 CACCAGCATGCATTTCACCGGTTGGAAATTGGGCCTCAAAACTGGCATGTACTACCTCCG 16206 Query 20812 GAC 20814 || Sbjct 16205 TAC 16203 >seq959 Length=28360 Score = 129 bits (142), Expect = 6e-25 Identities = 299/442 (68%), Gaps = 8/442 (2%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 |||||| | ||||| || || || || || ||||||||| |||| ||| | ||| Sbjct 16026 CGTCTCGTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATT 16085 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 |||||||||||||||||||| |||||||| || |||| || ||||||||||| |||||| Sbjct 16086 TTCTGGCTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCC 16145 Query 60102 CGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAA 60160 || || |||||| | || || || || || | ||||| ||| ||||| | | || | Sbjct 16146 CGTGATGAGGGCATGCACACAGACTTCGC-CTGTCTGCTCTTTTCCCACCT-TCGCAACA 16203 Query 60161 ATGCCCTTCCAAGGATATTCACAAGATTGTTCAGTG--GGCTTGTGAAGTGGAGAGCGAG 60218 | || || | | | | || | ||| || | | | | || | || ||| Sbjct 16204 AGCCCGATCGGGAGCTGGTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAG-GAG 16262 Query 60219 TTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAG 60278 ||| | ||||| | | || | ||| |||| ||| || | ||| || Sbjct 16263 TTCGTGACAGACTCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAA 16322 Query 60279 TACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGG-AGAAGGACCAATTTACGG 60337 ||||| ||||||| || || ||||| || | | | || | || | | |||| Sbjct 16323 TACATCGAGTTTGTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAGCAGGTA-TTACAA 16381 Query 60338 CGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTT 60397 || | ||||| || |||| ||||||| ||||||||||| || |||||||| ||||| Sbjct 16382 CGCCACCAACCCATTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTT 16441 Query 60398 TGAGAAGCGGGTCGGGGATTAT 60419 ||||||| | ||||| |||||| Sbjct 16442 TGAGAAGAGAGTCGGTGATTAT 16463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548513260409520