Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 224 1e-53
seq959 129 6e-25
>seq1295
Length=44835
Score = 224 bits (248), Expect = 1e-53
Identities = 911/1406 (65%), Gaps = 36/1406 (3%)
Strand=Plus/Plus
Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566
||||||||| || || || || ||| ||||| | ||||||||||||||| ||
Sbjct 16523 GAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACGGCTCGAAACATTC 16582
Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626
||| ||||||||||| | ||||| || || |||||||| || ||||| | || ||
Sbjct 16583 ATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCACCAGCAATGAGTT 16642
Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680
|| | || ||| |||| |||| || | |||||| | || | |
Sbjct 16643 GCGGACTCCGTGCTGTGCAATCTTCGCCTTGAGTGAATCCCAGTCCCAGAGATCGGTTGG 16702
Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCC-GGCGACCCCTTGAACG 78739
|| | ||||||||||| ||| || | |||| | | | || || || | | |
Sbjct 16703 CGTCACGCCCCACATGTCGTATTGCAGT-TCCCCTTTGCTGACAGGGGAGCCAGCGTAAG 16761
Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACA 78799
|||| || | || | || || |||||||| || | || || |||| || |
Sbjct 16762 TCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTCCAACGCTCCGTGATAAA 16821
Query 78800 CAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCC-- 78857
| ||||||||| |||| ||| | || | || |||||||| | ||
Sbjct 16822 TGGTCTCGAAGATCTGAATGTTTAGCCGTCTTGCTTCGGGAGAGTCGAACGGCATGCGAA 16881
Query 78858 GAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCAT 78917
||||| | ||| ||||||||||||| ||| || | | ||||| |||||||| |
Sbjct 16882 GAGCA--AGGAAAGCATCGGCCAGGCCACTGACACCCAAGCCAATCGGGCGGTGGCGTAA 16939
Query 78918 GTTGCTCTTTCGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGT 78976
|||||||| || || | | | |||| ||| ||| |||||| | ||||| ||
Sbjct 16940 ATTGCTCTTGCGAGCTTC-TGGCACGGGATAATGGTTGATATCGATAATCTTGTTCAAGT 16998
Query 78977 TACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAA---TGATTTCCTT 79033
| ||| || ||| ||| || || | | ||| ||||| || | |||| |
Sbjct 16999 TTTTCGTAACCACCTTAGTAACTTCATGAAGTTTCTTGAAATTGTAACTCTCATTTTCAA 17058
Query 79034 TG---ATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGC 79090
| | | | || |||| ||| ||||| || ||||| || || ||| || |||
Sbjct 17059 TATCCACGTATGTGGGTAAAGCCAGGGATGCAAGATTGCAGACAGCGACCTCATCAGGGG 17118
Query 79091 TAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCT 79150
|| ||| || || || ||||||| || || || ||||| || | ||| ||||
Sbjct 17119 CAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCGAATGGTACCAAGGTTTTTCT 17178
Query 79151 GGTTGC-TCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACC 79209
||||| | |||| || ||| | ||||| ||||||||| | || || || |||||
Sbjct 17179 GGTTGGATTTTCTGTTTGCAG-CATCCTTATAGCACATGAAGGGAGTACCTGTCTCCGTT 17237
Query 79210 TGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTAC-CGACC 79268
||| || ||| | ||| ||| | | | | || || ||| || | | | |||||
Sbjct 17238 TGAGCCTCGAGGATTGCGTACCATAGTTTCTGCGCACGCACAGTCT-CGCGACCACGACC 17296
Query 79269 CTGTGCGA-CGTAC-GTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGG 79326
|| ||| |||| || || || | | | ||| |||||||| ||||| | |||
Sbjct 17297 CTC-GCGTTCGTATTGTTCG-TAGAGAGCCTCGAACTTTTCCCCATACACATCAGCAAGG 17354
Query 79327 CCCGGGCACTCGTGCGGGCACATCAGGTGCCA-GTCCTCGTCCTTCTCAACCTTCTCCAT 79385
|| ||||| |||||||| ||||||| ||| || || || || ||| ||| | |||
Sbjct 17355 CCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCT-GTTCTGCTCCACCCGTTTCAT 17413
Query 79386 GAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCC 79445
||| | ||| |||||||| || || ||| |||||||| ||| | || || | |||
Sbjct 17414 GAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCACGGACTTCTTCTTTGCC 17473
Query 79446 CTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGAT 79505
|||||| ||||| ||||| ||| | ||||| || ||||||||||| ||||||||
Sbjct 17474 ATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGAT 17533
Query 79506 GGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAA 79565
||| || | ||| |||||| ||| || || | ||| ||||| || ||||||||| |
Sbjct 17534 GGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTA 17593
Query 79566 AACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACC 79625
|| || ||||| || || | |||| | || || || || || | ||
Sbjct 17594 TACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCC 17653
Query 79626 GCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCG 79684
| || |||||| | | | | || || || || || | ||| ||||| |
Sbjct 17654 TGTTGCGCGAATG-CGGTGTACATTGAGACCTATACCACCAGCATTCTTTGAGATCATGG 17712
Query 79685 CGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGA 79744
|||| || || || || || ||||||||||| ||| |||||||| | | || ||
Sbjct 17713 CGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGA 17772
Query 79745 AGCAGCTCGACATCTGTG-GGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGC 79803
| || | || || | || || | || ||||| |||| ||||| || | || ||
Sbjct 17773 AACATGAAGCCAATTGGGCGGATGGT-GTGCCGGCCATGAACAGGGTTGGTGAAGCATGA 17831
Query 79804 GTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC-CTTGACGCGCGGGAGGTCGTCGCC 79862
|||||| |||| | ||| || | ||| ||||| ||| || | || ||| |||||
Sbjct 17832 GTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGC-CTCGATGTCTTCGCC 17890
Query 79863 GTGGATGCCGACCGCGACGCGCATGA 79888
||| || || ||||| || |||||||
Sbjct 17891 GTGTATACCCACCGCAACACGCATGA 17916
Score = 206 bits (228), Expect = 3e-48
Identities = 1109/1743 (64%), Gaps = 73/1743 (4%)
Strand=Plus/Minus
Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGC----GAGACA 19171
||||||| || ||||| || || || ||||| ||| || ||| | || |||||
Sbjct 17916 TCATGCGTGTTGCGGTGGGTATACACGGCGAAGACATC----GAGGCTGCAATCGAGACC 17861
Query 19172 TACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGT 19231
||| |||| ||| | |||| |||||| || || | || ||||| |||| |||||
Sbjct 17860 TACAACCTCATGTCGAACAAGTACTTCACTCATGCTTCACCAACCCTGTTCATGGCCGGC 17801
Query 19232 ACGAACAACC-CGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGA 19290
|| | || || | || || | |||||| | | | |||||||| ||||| || ||
Sbjct 17800 AC-ACCATCCGCCCAATTGGCTTCATGTTTCTTGATTGACATGAAGGAGGACAGTATCGA 17742
Query 19291 GGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350
|||||| || || || || || ||||| ||||| ||| | || ||||| ||
Sbjct 17741 GGGCATTTATGACACTCTGAAAACATGCGCCATGATCTCAAAGAATGCTGGTGGTATAGG 17682
Query 19351 GATC------CACTGC--TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402
|| ||| || ||| | | || || ||| | | ||| || ||
Sbjct 17681 TCTCAATGTACACCGCATTCGCGCAACAGG----GTCGTATA----TTGGTGGCACAAAT 17630
Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462
||| | |||| | || || ||||| || || | ||||||||| || |||| |||
Sbjct 17629 GGAACTTCAAACGGATTGGTACCTATGCTTCGTGTATACAACAACACTGCGCGGTATGTC 17570
Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522
| || || ||| ||| || || | || |||||||| || ||||| ||||| |||
Sbjct 17569 GATCAAGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGCCGTGGCATGCG 17510
Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582
||| | | |||||||| |||||| |||||| || | || || | || ||||
Sbjct 17509 GACATATTCTCCTTCCTCGACCTGCGCAAGAACCATGGCAAAGAAGAAGTCCGTGCTCGC 17450
Query 19583 GACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGA 19641
||||| ||| ||| ||| ||||| || ||| | |||||| | ||| ||| || ||
Sbjct 17449 GACCTTTTCTACGCGCTT-TGGATCCCAGACTTGTTCATGAAACGGGTGGAGCAGAACAG 17391
Query 19642 AGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGC 19701
|||| ||||||| |||||||||||||||||||| | || || || || ||
Sbjct 17390 CACATGGACTTTGATGTGTCCGCACGAATGCCCTGGCCTTGCTGATGTGTATGGGGAAAA 17331
Query 19702 GTTCAATGAGTTGTACCGGAC-TTACGTAGCCCAGGGCCG-GTTCAAGAAGGTGGTCCGG 19759
|||| | | | || || || |||| | | |||| || | || | || || ||
Sbjct 17330 GTTCGAGGCTCTCTA-CGAACAATACGAACGCGAGGGTCGTGGTCGCG-AGACTGTGCGT 17273
Query 19760 GCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATG 19819
|| | | | | ||| || ||||| | || ||||| || || || | ||||
Sbjct 17272 GCGCAGAAACTATGGTACGCAATCCTCGAGGCTCAAACGGAGACAGGTACTCCCTTCATG 17213
Query 19820 TGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCG 19879
||||| ||||| || || ||| || || || ||||| ||| | || | || ||
Sbjct 17212 TGCTATAAGGATGCTGCAAACAGAAAATCCAACCAGAAAAACCTTGGTACCATTCGCTCT 17153
Query 19880 TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAAT 19939
||||||||||| ||||| || |||||| | || || ||| || || || |||
Sbjct 17152 TCCAACCTGTGCACTGAGATTATGGAGTACACTGCCCCTGATGAGGTCGCTGTCTGCAAT 17093
Query 19940 CTGGCGTCCCTGTGCCTGCCGACTTTCGTCAA-----GGCCTCCTCCTT-CGACTTTGCC 19993
|| || |||||| | || || | ||| | | || | | ||
Sbjct 17092 CTTGCATCCCTGGCTTTACCCACATACGTGGATATTGAAAATGAGAGTTACAATTTCAAG 17033
Query 19994 AAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAAC 20053
||| | | || || || ||| || ||| || |||| | |||||| |||
Sbjct 17032 AAACTTCATGAAGTTACTAAGGTGGTTACGAAAAACTTGAACAAGATTATCGATATCAAC 16973
Query 20054 TTTTA-CCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGG 20112
||| |||| | | | || |||||| ||| | |||||||| ||||| | | ||
Sbjct 16972 CATTATCCCGTGCCA-GAAGCTCGCAAGAGCAATTTACGCCACCGCCCGATTGGCTTGGG 16914
Query 20113 CGTCCAGGGCCTGGCCGACGTTTTCATGATGCTC--GGCCTCTCATTCGACGATCCCAAG 20170
||| ||||||||||| | |||| | ||||| || | | |||||| |||| |
Sbjct 16913 TGTCAGTGGCCTGGCCGATGCTTTCCT--TGCTCTTCGCATGCCGTTCGACTCTCCCGAA 16856
Query 20171 GCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCG 20230
|| | ||| |||| ||||||||| || | || |||| || | || ||
Sbjct 16855 GCAAGACGGCTAAACATTCAGATCTTCGAGACCATTTATCACGGAGCGTTGGAGGCCTCC 16796
Query 20231 TGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG-CGTCCGA 20289
|||||||| || | | ||| || || ||||| | | || || || | | | |
Sbjct 16795 TGCGAACTGGCGGAGCAACTCGGTCCATATGAGACTTACGCTGGCTCCCCTGTCAGCAAA 16736
Query 20290 GGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC------GC 20343
||| | || || |||||||||||||| || | || | ||| | |
Sbjct 16735 GGGGA-ACTGCAATACGACATGTGGGGCGTGACGCCAACCGATCTCTGGGACTGGGATTC 16677
Query 20344 CCTCAAGGTTGAGAT--CA-AGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCAT 20400
||||||| |||| || || ||||| | |||||||| ||||| || ||||||||
Sbjct 16676 ACTCAAGGCGAAGATTGCACAG---CACGGAGTCCGCAACTCATTGCTGGTGGCGCCCAT 16620
Query 20401 GCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGAC 20460
||| || || ||||| | ||||||||||| ||| || ||||||||||||||| |
Sbjct 16619 GCCAACAGCGTCGACTTCGCAGATCATGGGCTTCAATGAATGTTTCGAGCCGTACACTTC 16560
Query 20461 CAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGT 20520
||||| ||| |||||| || || || |||||| |||| || | | ||||
Sbjct 16559 GAACATTTACAGTCGTCGTGTTCTAGCTGGCGAGTTCCAGGTGGTCAA----CCCATGGT 16504
Query 20521 CCGCGA------CTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGT 20574
|| | |||| | | || | | ||||| ||| || ||||| || |
Sbjct 16503 -TGCTAAAGGACCTTGTCG-ATCGCGGTCTCTGGTCAGACAACATGAAGAACCGCATCAT 16446
Query 20575 CCGAGCCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTCAAGGACATTTA 20631
|| |||||| || ||| |||| | | || || | ||||||| | | ||||
Sbjct 16445 TGCAGATGGCGGGTCTGTTCAGCGCATCCCGAACATTCCAGATGACCTCAAAGCCCTTTA 16386
Query 20632 CAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGC 20691
|| ||| |||||||||||| ||| || | | ||||| || || ||||||||
Sbjct 16385 CAAGACTGTATGGGAAATCAGTCAGCGTCATATTGTGCAGATGGCTGCTGACCGCGGCGC 16326
Query 20692 CTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCT 20751
| ||||||||| || || ||||| ||| | |||| | | || | | ||| ||| |
Sbjct 16325 ATTCATCGACCAATCTCATTCGCTAAATATTCACATGAAAGAACCCACCATGGGTAAGAT 16266
Query 20752 GAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCG 20811
| | ||||||| | ||| ||| | ||| ||||| || ||||||||||| || ||
Sbjct 16265 CACCAGCATGCATTTCACCGGTTGGAAATTGGGCCTCAAAACTGGCATGTACTACCTCCG 16206
Query 20812 GAC 20814
||
Sbjct 16205 TAC 16203
>seq959
Length=28360
Score = 129 bits (142), Expect = 6e-25
Identities = 299/442 (68%), Gaps = 8/442 (2%)
Strand=Plus/Plus
Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041
|||||| | ||||| || || || || || ||||||||| |||| ||| | |||
Sbjct 16026 CGTCTCGTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATT 16085
Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101
|||||||||||||||||||| |||||||| || |||| || ||||||||||| ||||||
Sbjct 16086 TTCTGGCTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCC 16145
Query 60102 CGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAA 60160
|| || |||||| | || || || || || | ||||| ||| ||||| | | || |
Sbjct 16146 CGTGATGAGGGCATGCACACAGACTTCGC-CTGTCTGCTCTTTTCCCACCT-TCGCAACA 16203
Query 60161 ATGCCCTTCCAAGGATATTCACAAGATTGTTCAGTG--GGCTTGTGAAGTGGAGAGCGAG 60218
| || || | | | | || | ||| || | | | | || | || |||
Sbjct 16204 AGCCCGATCGGGAGCTGGTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAG-GAG 16262
Query 60219 TTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAG 60278
||| | ||||| | | || | ||| |||| ||| || | ||| ||
Sbjct 16263 TTCGTGACAGACTCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAA 16322
Query 60279 TACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGG-AGAAGGACCAATTTACGG 60337
||||| ||||||| || || ||||| || | | | || | || | | ||||
Sbjct 16323 TACATCGAGTTTGTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAGCAGGTA-TTACAA 16381
Query 60338 CGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTT 60397
|| | ||||| || |||| ||||||| ||||||||||| || |||||||| |||||
Sbjct 16382 CGCCACCAACCCATTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTT 16441
Query 60398 TGAGAAGCGGGTCGGGGATTAT 60419
||||||| | ||||| ||||||
Sbjct 16442 TGAGAAGAGAGTCGGTGATTAT 16463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548513260409520
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