Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1295 122 1e-22 seq451 107 2e-18 seq959 82.4 8e-11 >seq1295 Length=44835 Score = 122 bits (134), Expect = 1e-22 Identities = 378/571 (66%), Gaps = 12/571 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || ||||||| ||||| || ||| | | || ||||| ||| Sbjct 17916 TCATGCGTGTTGCGGTGGGTATACACGGCGAAGACATCGAGGCTGCAATCGAGACCTACA 17857 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | |||||||| || || || | ||||||||||||| || || || Sbjct 17856 ACCTCATGTCGAACAAGTACTTCACTCATGCTTCACCAACCCTGTTCATGGCCGGCACAC 17797 Query 53313 -ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||| || || || | || ||| || | | |||||||| ||| ||||| ||| Sbjct 17796 CATCCGCC-CAATTGGCTTCATGTTTCTTGATTGACATGAAGGAGGACAGTATCGAGGGC 17738 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || || || || || || || ||| ||||| ||| | |||||||| ||| || Sbjct 17737 ATTTATGACACTCTGAAAACATGCGCCATGATCTCAAAGAATGCTGGTGGTATAGGTCTC 17678 Query 53432 CACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | || | | || | || || | || | || || || || || | Sbjct 17677 AA-TGTAC-ACCGCATTCGCGCAACAGGGTCGTATATTGGTGGCACAAATGGAACTTCAA 17620 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | ||| | || |||||||| || || | ||||||||| || ||||| ||| | || |||| Sbjct 17619 ACGGATTGGTACCTATGCTTCGTGTATACAACAACACTGCGCGGTATGTCGATCAAGGTG 17560 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | ||||| || | || |||||||| || ||||||||||| || ||||| | Sbjct 17559 GCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGCCGTGGCATGCGGACATATTCT 17500 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT- 53667 || ||||| ||||| ||| || || | ||||| | || ||| || ||||| || Sbjct 17499 CCTTCCTCGACCTGCGCAAGAACCATGGCAAAGAAGAAGTCCG-TGCTCGCGACCTTTTC 17441 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGA-GTGGT 53726 ||| || || ||||| || ||| | |||||| || ||||||| || || || | ||| Sbjct 17440 TAC-GCGCTTTGGATCCCAGACTTGTTCATGAAACGGGTGGAGCAGAAC-AGCACATGGA 17383 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 ||||||| ||| |||| ||||| ||||| Sbjct 17382 CTTTGATGTGTCCGCACGAATGCCCTGGCCT 17352 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| |||| |||||||| |||||||| |||||||| | |||||||||||| | Sbjct 16645 CGCAACTCATTGCTGGTGGCGCCCATGCCAACAGCGTCGACTTCGCAGATCATGGGCTTC 16586 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || || |||||||||||||| | ||||| ||| || || ||||| || ||| Sbjct 16585 AATGAATGTTTCGAGCCGTACACTTCGAACATTTACAGTCGTCGTGTTCTAGCTGGCGAG 16526 Query 55604 TT 55605 || Sbjct 16525 TT 16524 >seq451 Length=24497 Score = 107 bits (118), Expect = 2e-18 Identities = 275/419 (66%), Gaps = 0/419 (0%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || || || ||||| || || || |||||||| ||||||| |||||||||| Sbjct 17972 CCTGTCCCAATCCCGTCTGCGCCGTTTATAAGAATCATAGGCACGATGGGAACGTAGACT 18031 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || || || | | || || || || |||| ||| | || | ||| || Sbjct 18032 TCGGGTTCGATGGTCTTGCCATCATCAGTATTGTACGAGAGAAGCGGTTCGTCTGCTTGA 18091 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | ||||| ||| | | | |||| || || ||| |||||||||||| ||| |||||| Sbjct 18092 TGAAATATTTTCCTTGCGAATGGTGATAATCGCGTGTAAATGTAACGAGCGCTGGCAGCA 18151 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 || | ||||| |||||||| ||||| | || ||||||||| || | ||| Sbjct 18152 TCTTGACCACCTTGAAGACGCGAGCCGAAATTGCCGGAGGGCTCCAAGCAATTAATATTG 18211 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 || | ||| || || |||||||||||| ||||| || ||| | | | ||||| Sbjct 18212 TTTGAGCCAACGAAATTTTGAGCCAAGCCAACAATTGTCTGTTGCAAGGATACATCACCG 18271 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511 | ||| || || | | | || | || ||||| | | | ||||| || || | Sbjct 18272 TACGCATAAGCAGTAAGGCCGGAGACAGACCCAGCCAGTTCAACAACCTTGATATCCTTC 18331 Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | | ||| | ||||| || || || || ||||||| ||||||||| ||||| Sbjct 18332 TTTAAGTTTCGACGAAAGCAGGTGTACATGACTTTTCGCTGACCTGGCTTCAGTCCATC 18390 >seq959 Length=28360 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 |||||||||||| | ||| ||||| || |||||||| || ||||||||||||||||||| Sbjct 16463 ATAATCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCCGCCAACGAGATGTTCTCCAT 16404 Query 74522 CCAGTCGAAAGGGTT 74536 |||| || ||||| Sbjct 16403 GAAGTCAAATGGGTT 16389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204487943400