Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 122 1e-22
seq451 107 2e-18
seq959 82.4 8e-11
>seq1295
Length=44835
Score = 122 bits (134), Expect = 1e-22
Identities = 378/571 (66%), Gaps = 12/571 (2%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || || ||||||| ||||| || ||| | | || ||||| |||
Sbjct 17916 TCATGCGTGTTGCGGTGGGTATACACGGCGAAGACATCGAGGCTGCAATCGAGACCTACA 17857
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | |||||||| || || || | ||||||||||||| || || ||
Sbjct 17856 ACCTCATGTCGAACAAGTACTTCACTCATGCTTCACCAACCCTGTTCATGGCCGGCACAC 17797
Query 53313 -ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371
||| || || || | || ||| || | | |||||||| ||| ||||| |||
Sbjct 17796 CATCCGCC-CAATTGGCTTCATGTTTCTTGATTGACATGAAGGAGGACAGTATCGAGGGC 17738
Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431
|| || || || || || || ||| ||||| ||| | |||||||| ||| ||
Sbjct 17737 ATTTATGACACTCTGAAAACATGCGCCATGATCTCAAAGAATGCTGGTGGTATAGGTCTC 17678
Query 53432 CACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489
| || | | || | || || | || | || || || || || |
Sbjct 17677 AA-TGTAC-ACCGCATTCGCGCAACAGGGTCGTATATTGGTGGCACAAATGGAACTTCAA 17620
Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549
| ||| | || |||||||| || || | ||||||||| || ||||| ||| | || ||||
Sbjct 17619 ACGGATTGGTACCTATGCTTCGTGTATACAACAACACTGCGCGGTATGTCGATCAAGGTG 17560
Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609
| ||||| || | || |||||||| || ||||||||||| || ||||| |
Sbjct 17559 GCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGCCGTGGCATGCGGACATATTCT 17500
Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT- 53667
|| ||||| ||||| ||| || || | ||||| | || ||| || ||||| ||
Sbjct 17499 CCTTCCTCGACCTGCGCAAGAACCATGGCAAAGAAGAAGTCCG-TGCTCGCGACCTTTTC 17441
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGA-GTGGT 53726
||| || || ||||| || ||| | |||||| || ||||||| || || || | |||
Sbjct 17440 TAC-GCGCTTTGGATCCCAGACTTGTTCATGAAACGGGTGGAGCAGAAC-AGCACATGGA 17383
Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757
||||||| ||| |||| ||||| |||||
Sbjct 17382 CTTTGATGTGTCCGCACGAATGCCCTGGCCT 17352
Score = 89.7 bits (98), Expect = 6e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||||| |||| |||||||| |||||||| |||||||| | |||||||||||| |
Sbjct 16645 CGCAACTCATTGCTGGTGGCGCCCATGCCAACAGCGTCGACTTCGCAGATCATGGGCTTC 16586
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|| || |||||||||||||| | ||||| ||| || || ||||| || |||
Sbjct 16585 AATGAATGTTTCGAGCCGTACACTTCGAACATTTACAGTCGTCGTGTTCTAGCTGGCGAG 16526
Query 55604 TT 55605
||
Sbjct 16525 TT 16524
>seq451
Length=24497
Score = 107 bits (118), Expect = 2e-18
Identities = 275/419 (66%), Gaps = 0/419 (0%)
Strand=Plus/Plus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
|| || || || || ||||| || || || |||||||| ||||||| ||||||||||
Sbjct 17972 CCTGTCCCAATCCCGTCTGCGCCGTTTATAAGAATCATAGGCACGATGGGAACGTAGACT 18031
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
|| || || | | || || || || |||| ||| | || | ||| ||
Sbjct 18032 TCGGGTTCGATGGTCTTGCCATCATCAGTATTGTACGAGAGAAGCGGTTCGTCTGCTTGA 18091
Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331
| ||||| ||| | | | |||| || || ||| |||||||||||| ||| ||||||
Sbjct 18092 TGAAATATTTTCCTTGCGAATGGTGATAATCGCGTGTAAATGTAACGAGCGCTGGCAGCA 18151
Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391
|| | ||||| |||||||| ||||| | || ||||||||| || | |||
Sbjct 18152 TCTTGACCACCTTGAAGACGCGAGCCGAAATTGCCGGAGGGCTCCAAGCAATTAATATTG 18211
Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451
|| | ||| || || |||||||||||| ||||| || ||| | | | |||||
Sbjct 18212 TTTGAGCCAACGAAATTTTGAGCCAAGCCAACAATTGTCTGTTGCAAGGATACATCACCG 18271
Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511
| ||| || || | | | || | || ||||| | | | ||||| || || |
Sbjct 18272 TACGCATAAGCAGTAAGGCCGGAGACAGACCCAGCCAGTTCAACAACCTTGATATCCTTC 18331
Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
| | ||| | ||||| || || || || ||||||| ||||||||| |||||
Sbjct 18332 TTTAAGTTTCGACGAAAGCAGGTGTACATGACTTTTCGCTGACCTGGCTTCAGTCCATC 18390
>seq959
Length=28360
Score = 82.4 bits (90), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521
|||||||||||| | ||| ||||| || |||||||| || |||||||||||||||||||
Sbjct 16463 ATAATCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCCGCCAACGAGATGTTCTCCAT 16404
Query 74522 CCAGTCGAAAGGGTT 74536
|||| || |||||
Sbjct 16403 GAAGTCAAATGGGTT 16389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547204487943400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |