Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 241 1e-58
seq990 152 6e-32
seq1047 109 6e-19
seq959 107 2e-18
seq928 104 3e-17
>seq1295
Length=44835
Score = 241 bits (266), Expect = 1e-58
Identities = 702/1057 (66%), Gaps = 43/1057 (4%)
Strand=Plus/Plus
Query 80725 TCAGCCAGGCC-CTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-G 80782
|| |||||||| |||| | || | | | |||||||||||||| || | || || |
Sbjct 16896 TCGGCCAGGCCACTGA-CACCCAAGCCAATCGGGCGGTGGCGTAAATT-GCTCTTGCGAG 16953
Query 80783 CCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCC 80842
| || || | || ||| ||| ||||||| | ||||| ||| ||||| |||
Sbjct 16954 CTTCTGGCACGGGATAATGGTTGATATCGATAATCTTGTTCAAGTTTTTCGTAACCACCT 17013
Query 80843 GTGTAACATCATGAAGTTTCT-GAAAGTCGAATTGG----TTCCCCTTC-ACAAATGCCG 80896
||||| ||||||||||||| |||| | || | ||| || || ||| |
Sbjct 17014 TAGTAACTTCATGAAGTTTCTTGAAATTGTAACTCTCATTTTCAATATCCACGTATGTGG 17073
Query 80897 G-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACG 80955
| || || |||||| || |||||||| || || ||||| |||| | || |||| |
Sbjct 17074 GTAAAGC-CAGGGATGCAAGATTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCCATA 17132
Query 80956 ATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCG 81015
|| || ||||||| || ||||| ||| ||||| |||||||||||||| || || |
Sbjct 17133 ATCTCAGTGCACAGGTTGGAAGAGCGAATGGTACCAAGGTTTTTCTGGTTGGATTTTCTG 17192
Query 81016 TTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATG 81075
|| ||| ||||| ||||||||| | || ||||| ||||| || | || ||||||
Sbjct 17193 TTTGCAGCATCCTTATAGCACATGAAGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATT 17252
Query 81076 GCGTCCCAAA---TCT-CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131
|||| ||| | ||| ||| ||| || || ||| || ||| | ||
Sbjct 17253 GCGTACCATAGTTTCTGCGCACGC----ACAGTCTCGCGACCACGACCCTCGCGTTCGTA 17308
Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191
| |||| | |||||||| | || | | |||| ||| | ||||| ||||
Sbjct 17309 TTGTTCGTAGAGAGCCTCGAACTTTTCCCCATACACATCAGCAAGGCCAGGGCATTCGTG 17368
Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTTCT-CTACAGCC--TTCATGAAAGCGTCAGG 81248
|| ||||||| ||| ||| ||||| || || || |||||||| ||| ||
Sbjct 17369 CGGACACATCAAAGTCCAT---GTGCTGTTCTGCTCCACCCGTTTCATGAACAAGTCTGG 17425
Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307
|||||| || ||| ||| |||||||| ||| || | || || | || ||||| ||
Sbjct 17426 GATCCAAAGCGCGTAGAAAAGGTCGCGAGCA-CGGACTTCTTCTTTGCCATGGTTCTTGC 17484
Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367
||| ||||| ||| | |||||||||||||| ||||| ||||| | ||| | | |
Sbjct 17485 GCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGGCAC 17544
Query 81368 CCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCA 81421
| | |||| |||||| || | ||| || || ||||| ||| ||||||| |
Sbjct 17545 C---GGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACACGAA 17601
Query 81422 ACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGC 81481
|||||| | | || | ||| || || || || | ||| |||||| | ||||
Sbjct 17602 GCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTTGCGC 17661
Query 81482 GCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCG 81539
| | | || |||| ||||| || ||||| | |||||| ||| || ||
Sbjct 17662 GAATGCGGTGTACATTG--AGACCTATACCACCAGCATTCTTTGAGATCATGGCGCATGT 17719
Query 81540 GTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCT 81599
|||| || |||||||| |||||||| || || | |||||||||| |||||||||
Sbjct 17720 TTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGA 17779
Query 81600 TGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATA 81659
| || || | | | || |||||| ||||||| ||||| | || ||| |||| ||
Sbjct 17780 AGCCAATTGGGCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTGAAGTA 17839
Query 81660 ACGGTTTGACATCAGGTCATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATAC 81718
||| ||||| |||| ||||| || ||| || | | || || || ||||| ||||
Sbjct 17840 CTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCG-ATGTCTTCGCCGTGTATAC 17898
Query 81719 CGATAGCTACACGCATAAACATGTACTGGGGCGTCTC 81755
| | || |||||||| | ||||| || || ||||
Sbjct 17899 CCACCGCAACACGCATGATCATGTGTTGCGGTCTCTC 17935
>seq990
Length=11377
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| || |||||||| || || || ||||||||||||||
Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || |||| | ||||| || || || ||||| || ||||| ||||||
Sbjct 10390 GACACCATCGACAACGTGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 10449
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | ||||| ||||| || || || ||||||| || ||||| | ||||| ||
Sbjct 10450 CAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGATGGCCGCACCCTCTCTGACTACAAC 10509
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||| || || || || ||| ||||||| || |||||
Sbjct 10510 ATTCAAAAAGAAAGTACCCTCCACCTTGTCCTGCGTCTCCGTGGTGG 10556
Score = 141 bits (156), Expect = 1e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||| || || ||||||||||| || || || || || || || |
Sbjct 10786 ATGCAGATCTTCGTCAAAACTCTCACCGGCAAGACCATCACCCTAGAAGTCGAATCGAGC 10845
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| || ||||| | || ||||| ||||||||||| || ||||||||||||
Sbjct 10846 GATACGATTGACAACGTGAAGTCGAAGATTCAAGACAAGGAGGGCATACCTCCAGACCAG 10905
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | |||| || || || |||||| | || || | | | || | ||||||| |||
Sbjct 10906 CAGAGATTAATCTTCGCGGGCAAGCAATTGGAAGACGGTAGGACGTTGTCAGACTACAAT 10965
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
| || |||||| ||| || ||| | || ||||||| || || || |||
Sbjct 10966 ATTCAGAAGGAAAGCACCCTGCATTTGGTGCTGCGTCTGCGTGGCGGTCAA 11016
Score = 134 bits (148), Expect = 2e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| || || || ||||||||||| || ||||| || || || ||| ||
Sbjct 10558 ATGCAAATCTTTGTTAAAACTCTCACCGGCAAGACCATCACTCTAGAAGTCGAATCAAGT 10617
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || ||||| | || ||||| ||||| ||||| ||||| || |||||
Sbjct 10618 GATACGATAGACAACGTGAAGTCGAAGATTCAAGACAAAGAGGGTATTCCGCCTGACCAA 10677
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | ||||| || || || |||||||| || |||| | || | ||||||| ||
Sbjct 10678 CAAAGACTAATCTTCGCCGGCAAGCAACTGGAAGATGGGAGAACGTTGTCAGACTACAAC 10737
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || |||||| || | || | ||| ||||||| || |||||
Sbjct 10738 ATTCAGAAGGAAAGTACATTACACTTGGTCCTGCGTCTCCGTGGTGG 10784
Score = 122 bits (134), Expect = 1e-22
Identities = 151/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || ||||| ||||| ||||| || | || | ||| | |||
Sbjct 10126 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCGGACACGATCGATAATGTCAAGAGC 10185
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||| |||||||| || || |||||||| ||||| || || || || || || |||
Sbjct 10186 AAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAGCAACGCCTGATCTTCGCCGGCAAG 10245
Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
|||||||| |||| || || || ||| ||||| || | |||||||| ||| |||||
Sbjct 10246 CAACTCGAAGATGGCCGCACTCTGAGC-GACTACAACATTCAAAAGGAGAGCACGCTTCA 10304
Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632
||| || |||| || || |||||
Sbjct 10305 TCTTGTACTGCGCCTGCGTGGTGG 10328
>seq1047
Length=44052
Score = 109 bits (120), Expect = 6e-19
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||| ||||| || || || |||||||||||||| || ||||| || ||||| ||||||
Sbjct 5509 GACAAAGAGGGTATCCCACCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAG 5450
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|||| ||| ||||| | || |||||| | || ||||| |||||||||||| || |
Sbjct 5449 GATGGTCGCACCCTCTCCGATTATAATATTCAGAAGGAGAGCACTCTTCATCTGGTTCTC 5390
Query 27619 CGTCTTCGCGGTGGA 27633
|| | || ||||||
Sbjct 5389 CGCTTGCGTGGTGGA 5375
>seq959
Length=28360
Score = 107 bits (118), Expect = 2e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776
||||||| ||||| ||| ||| || || |||||||| ||| | || ||| || |||
Sbjct 16026 CGTCTCGTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATT 16085
Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836
|||||||| |||||||| || || ||||| |||||| | ||||| |||||||| || ||
Sbjct 16086 TTCTGGCTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCC 16145
Query 64837 CGGGACGAGGGGCTCCACCAAGAATTTGC 64865
|| || ||||| | ||| ||| || ||
Sbjct 16146 CGTGATGAGGGCATGCACACAGACTTCGC 16174
>seq928
Length=40960
Score = 104 bits (114), Expect = 3e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| || || |||||||| || || || ||||| ||||| | || | ||
Sbjct 284 CTTCGTCAAGACCCTCACGGGCAAGACCATCACACTCGAGGTCGAGTCTAGCGACACGAT 343
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| ||||| || || || ||||||||||| || || || || ||||| |||||
Sbjct 344 AGACAATGTGAAGAGCAAGATCCAAGACAAGGAGGGCATCCCACCCGATCAGCAACGTCT 403
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || ||||| ||||| | ||||||| || || | | ||||| || |||| ||
Sbjct 404 GATCTTCGCTGGCAAGCAGTTGGAGGATGGGCGCACTTTGTCCGACTACAACATCCAGAA 463
Query 27594 GGAAT 27598
|| ||
Sbjct 464 GGTAT 468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570298402094960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |