Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1295 241 1e-58 seq990 152 6e-32 seq1047 109 6e-19 seq959 107 2e-18 seq928 104 3e-17 >seq1295 Length=44835 Score = 241 bits (266), Expect = 1e-58 Identities = 702/1057 (66%), Gaps = 43/1057 (4%) Strand=Plus/Plus Query 80725 TCAGCCAGGCC-CTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-G 80782 || |||||||| |||| | || | | | |||||||||||||| || | || || | Sbjct 16896 TCGGCCAGGCCACTGA-CACCCAAGCCAATCGGGCGGTGGCGTAAATT-GCTCTTGCGAG 16953 Query 80783 CCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCC 80842 | || || | || ||| ||| ||||||| | ||||| ||| ||||| ||| Sbjct 16954 CTTCTGGCACGGGATAATGGTTGATATCGATAATCTTGTTCAAGTTTTTCGTAACCACCT 17013 Query 80843 GTGTAACATCATGAAGTTTCT-GAAAGTCGAATTGG----TTCCCCTTC-ACAAATGCCG 80896 ||||| ||||||||||||| |||| | || | ||| || || ||| | Sbjct 17014 TAGTAACTTCATGAAGTTTCTTGAAATTGTAACTCTCATTTTCAATATCCACGTATGTGG 17073 Query 80897 G-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACG 80955 | || || |||||| || |||||||| || || ||||| |||| | || |||| | Sbjct 17074 GTAAAGC-CAGGGATGCAAGATTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCCATA 17132 Query 80956 ATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCG 81015 || || ||||||| || ||||| ||| ||||| |||||||||||||| || || | Sbjct 17133 ATCTCAGTGCACAGGTTGGAAGAGCGAATGGTACCAAGGTTTTTCTGGTTGGATTTTCTG 17192 Query 81016 TTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATG 81075 || ||| ||||| ||||||||| | || ||||| ||||| || | || |||||| Sbjct 17193 TTTGCAGCATCCTTATAGCACATGAAGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATT 17252 Query 81076 GCGTCCCAAA---TCT-CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131 |||| ||| | ||| ||| ||| || || ||| || ||| | || Sbjct 17253 GCGTACCATAGTTTCTGCGCACGC----ACAGTCTCGCGACCACGACCCTCGCGTTCGTA 17308 Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191 | |||| | |||||||| | || | | |||| ||| | ||||| |||| Sbjct 17309 TTGTTCGTAGAGAGCCTCGAACTTTTCCCCATACACATCAGCAAGGCCAGGGCATTCGTG 17368 Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTTCT-CTACAGCC--TTCATGAAAGCGTCAGG 81248 || ||||||| ||| ||| ||||| || || || |||||||| ||| || Sbjct 17369 CGGACACATCAAAGTCCAT---GTGCTGTTCTGCTCCACCCGTTTCATGAACAAGTCTGG 17425 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307 |||||| || ||| ||| |||||||| ||| || | || || | || ||||| || Sbjct 17426 GATCCAAAGCGCGTAGAAAAGGTCGCGAGCA-CGGACTTCTTCTTTGCCATGGTTCTTGC 17484 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367 ||| ||||| ||| | |||||||||||||| ||||| ||||| | ||| | | | Sbjct 17485 GCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGGCAC 17544 Query 81368 CCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCA 81421 | | |||| |||||| || | ||| || || ||||| ||| ||||||| | Sbjct 17545 C---GGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACACGAA 17601 Query 81422 ACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGC 81481 |||||| | | || | ||| || || || || | ||| |||||| | |||| Sbjct 17602 GCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTTGCGC 17661 Query 81482 GCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCG 81539 | | | || |||| ||||| || ||||| | |||||| ||| || || Sbjct 17662 GAATGCGGTGTACATTG--AGACCTATACCACCAGCATTCTTTGAGATCATGGCGCATGT 17719 Query 81540 GTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCT 81599 |||| || |||||||| |||||||| || || | |||||||||| ||||||||| Sbjct 17720 TTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGA 17779 Query 81600 TGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATA 81659 | || || | | | || |||||| ||||||| ||||| | || ||| |||| || Sbjct 17780 AGCCAATTGGGCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTGAAGTA 17839 Query 81660 ACGGTTTGACATCAGGTCATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATAC 81718 ||| ||||| |||| ||||| || ||| || | | || || || ||||| |||| Sbjct 17840 CTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCG-ATGTCTTCGCCGTGTATAC 17898 Query 81719 CGATAGCTACACGCATAAACATGTACTGGGGCGTCTC 81755 | | || |||||||| | ||||| || || |||| Sbjct 17899 CCACCGCAACACGCATGATCATGTGTTGCGGTCTCTC 17935 >seq990 Length=11377 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || |||||||| || || || |||||||||||||| Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||| | ||||| || || || ||||| || ||||| |||||| Sbjct 10390 GACACCATCGACAACGTGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 10449 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||| ||||| || || || ||||||| || ||||| | ||||| || Sbjct 10450 CAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGATGGCCGCACCCTCTCTGACTACAAC 10509 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||| || || || || ||| ||||||| || ||||| Sbjct 10510 ATTCAAAAAGAAAGTACCCTCCACCTTGTCCTGCGTCTCCGTGGTGG 10556 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || ||||||||||| || || || || || || || | Sbjct 10786 ATGCAGATCTTCGTCAAAACTCTCACCGGCAAGACCATCACCCTAGAAGTCGAATCGAGC 10845 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || ||||| | || ||||| ||||||||||| || |||||||||||| Sbjct 10846 GATACGATTGACAACGTGAAGTCGAAGATTCAAGACAAGGAGGGCATACCTCCAGACCAG 10905 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | |||| || || || |||||| | || || | | | || | ||||||| ||| Sbjct 10906 CAGAGATTAATCTTCGCGGGCAAGCAATTGGAAGACGGTAGGACGTTGTCAGACTACAAT 10965 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | || |||||| ||| || ||| | || ||||||| || || || ||| Sbjct 10966 ATTCAGAAGGAAAGCACCCTGCATTTGGTGCTGCGTCTGCGTGGCGGTCAA 11016 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || ||||||||||| || ||||| || || || ||| || Sbjct 10558 ATGCAAATCTTTGTTAAAACTCTCACCGGCAAGACCATCACTCTAGAAGTCGAATCAAGT 10617 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || ||||| | || ||||| ||||| ||||| ||||| || ||||| Sbjct 10618 GATACGATAGACAACGTGAAGTCGAAGATTCAAGACAAAGAGGGTATTCCGCCTGACCAA 10677 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||| || || || |||||||| || |||| | || | ||||||| || Sbjct 10678 CAAAGACTAATCTTCGCCGGCAAGCAACTGGAAGATGGGAGAACGTTGTCAGACTACAAC 10737 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||| || | || | ||| ||||||| || ||||| Sbjct 10738 ATTCAGAAGGAAAGTACATTACACTTGGTCCTGCGTCTCCGTGGTGG 10784 Score = 122 bits (134), Expect = 1e-22 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||| ||||| ||||| || | || | ||| | ||| Sbjct 10126 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCGGACACGATCGATAATGTCAAGAGC 10185 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| |||||||| || || |||||||| ||||| || || || || || || ||| Sbjct 10186 AAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAGCAACGCCTGATCTTCGCCGGCAAG 10245 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 |||||||| |||| || || || ||| ||||| || | |||||||| ||| ||||| Sbjct 10246 CAACTCGAAGATGGCCGCACTCTGAGC-GACTACAACATTCAAAAGGAGAGCACGCTTCA 10304 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || |||| || || ||||| Sbjct 10305 TCTTGTACTGCGCCTGCGTGGTGG 10328 >seq1047 Length=44052 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||| ||||| || || || |||||||||||||| || ||||| || ||||| |||||| Sbjct 5509 GACAAAGAGGGTATCCCACCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAG 5450 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| ||| ||||| | || |||||| | || ||||| |||||||||||| || | Sbjct 5449 GATGGTCGCACCCTCTCCGATTATAATATTCAGAAGGAGAGCACTCTTCATCTGGTTCTC 5390 Query 27619 CGTCTTCGCGGTGGA 27633 || | || |||||| Sbjct 5389 CGCTTGCGTGGTGGA 5375 >seq959 Length=28360 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776 ||||||| ||||| ||| ||| || || |||||||| ||| | || ||| || ||| Sbjct 16026 CGTCTCGTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATT 16085 Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836 |||||||| |||||||| || || ||||| |||||| | ||||| |||||||| || || Sbjct 16086 TTCTGGCTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCC 16145 Query 64837 CGGGACGAGGGGCTCCACCAAGAATTTGC 64865 || || ||||| | ||| ||| || || Sbjct 16146 CGTGATGAGGGCATGCACACAGACTTCGC 16174 >seq928 Length=40960 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || || || ||||| ||||| | || | || Sbjct 284 CTTCGTCAAGACCCTCACGGGCAAGACCATCACACTCGAGGTCGAGTCTAGCGACACGAT 343 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| ||||| || || || ||||||||||| || || || || ||||| ||||| Sbjct 344 AGACAATGTGAAGAGCAAGATCCAAGACAAGGAGGGCATCCCACCCGATCAGCAACGTCT 403 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| ||||| | ||||||| || || | | ||||| || |||| || Sbjct 404 GATCTTCGCTGGCAAGCAGTTGGAGGATGGGCGCACTTTGTCCGACTACAACATCCAGAA 463 Query 27594 GGAAT 27598 || || Sbjct 464 GGTAT 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298402094960