Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1047 102 7e-17 seq990 95.1 1e-14 >seq1047 Length=44052 Score = 102 bits (112), Expect = 7e-17 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 ||||| | |||| ||| || |||||||| || || ||||||||||||| || || || Sbjct 5385 AAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAGAGGGTGCGA 5444 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTC 39185 | || || ||||| ||||| ||||| || ||||||||||||| ||||||| | | ||| Sbjct 5445 CCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG-ATACCCTC 5503 Query 39186 TTTGTCCATG 39195 |||||| ||| Sbjct 5504 TTTGTCTATG 5513 >seq990 Length=11377 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || || || |||||||| || || || || | || || || | || ||||||||| Sbjct 10532 TGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGT 10473 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || | ||||||||||| | || | | |||||| || ||||||| Sbjct 10472 TTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTC 10413 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||| | ||| | | | || ||| |||||| || || | ||||| |||| || || Sbjct 10412 GATTTCA-CGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGT 10354 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || |||||||| ||||| Sbjct 10353 CAGTGTCTTGACAAAGATCTGCAT 10330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429536789348579