Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq1047 102 7e-17
seq990 95.1 1e-14
>seq1047
Length=44052
Score = 102 bits (112), Expect = 7e-17
Identities = 102/130 (78%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126
||||| | |||| ||| || |||||||| || || ||||||||||||| || || ||
Sbjct 5385 AAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAGAGGGTGCGA 5444
Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTC 39185
| || || ||||| ||||| ||||| || ||||||||||||| ||||||| | | |||
Sbjct 5445 CCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG-ATACCCTC 5503
Query 39186 TTTGTCCATG 39195
|||||| |||
Sbjct 5504 TTTGTCTATG 5513
>seq990
Length=11377
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || || || |||||||| || || || || | || || || | || |||||||||
Sbjct 10532 TGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGT 10473
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
||||| || || || | ||||||||||| | || | | |||||| || |||||||
Sbjct 10472 TTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTC 10413
Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
||| | ||| | | | || ||| |||||| || || | ||||| |||| || ||
Sbjct 10412 GATTTCA-CGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGT 10354
Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284
||| || || |||||||| |||||
Sbjct 10353 CAGTGTCTTGACAAAGATCTGCAT 10330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429536789348579
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |