Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq990 140 8e-28
seq1644 138 3e-27
seq928 120 7e-22
seq1643 102 2e-16
seq706 84.2 5e-11
>seq990
Length=11377
Score = 140 bits (154), Expect = 8e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| | ||| | || ||| || || | ||||| || | ||| ||
Sbjct 10779 ACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGT 10720
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|||||||||||| || ||||| || |||||||| |||| ||||||||| |||||||||||
Sbjct 10719 TCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACC 10660
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|| |||||||| ||||| |||||| || || || || | ||| || ||||
Sbjct 10659 CTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAG 10600
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | |||||| | || | ||||||
Sbjct 10599 AGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558
Score = 123 bits (136), Expect = 6e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| ||||| || || ||| || ||||| | ||||| ||| || |||
Sbjct 10323 ACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGT 10264
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| || ||||| || |||||||| || ||||| || || || || |||||
Sbjct 10263 GCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACC 10204
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||||||| ||||| ||| ||| ||||| ||||| || | || || || |
Sbjct 10203 TTCCTTGTCTTGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAG 10144
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| |||||||| ||
Sbjct 10143 AGTGATGGTCTTGCCGGT 10126
Score = 109 bits (120), Expect = 1e-18
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||||||||||||||| || ||||||||| | ||||| || | | ||
Sbjct 10551 ACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGT 10492
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || ||||| || |||||||| || | || || ||||| || || |||||
Sbjct 10491 GCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACC 10432
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|| || |||||||| || ||||| ||||||||||| || | || || || |
Sbjct 10431 CTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAG 10372
Query 225672 CGTGATCGTCTTGCCCGTCA 225691
||||| || ||||| ||||
Sbjct 10371 TGTGATGGTTTTGCCGGTCA 10352
Score = 104 bits (114), Expect = 6e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || | || || ||| ||| || || | |||||| || | ||| ||
Sbjct 11007 ACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGACAACGT 10948
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| || ||||| | ||||| || |||||||| | || || ||||| || || || ||
Sbjct 10947 CCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGTATGCC 10888
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| ||||| |||||| || || || || | ||| || ||||
Sbjct 10887 CTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATTCGACTTCTAG 10828
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | |||||| | ||| | |||||
Sbjct 10827 GGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786
>seq1644
Length=3299
Score = 138 bits (152), Expect = 3e-27
Identities = 203/280 (73%), Gaps = 7/280 (3%)
Strand=Plus/Plus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499
|| |||||||||||||||| | |||||||| ||||| |||||| |||||| | |
Sbjct 1594 ACATTATATTTAATATTTGCTTTATTTTCTGG-ATTATTAGGTACAGCTTTTTCTGTATT 1652
Query 7500 TATAAGGTTAGAATT-AGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558
||||| || ||||| ||| | ||| ||| ||| || || | ||| |||| | |
Sbjct 1653 AATAAGATTGGAATTGAGCGG-TCCTGGTGTACAA-TACATAGCAG--ATAACCAATTAT 1708
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
| || |||||| || |||||||| || ||||||| ||||| | || ||||| | |
Sbjct 1709 ATAATAGTATTATAACTGCGCATGCTATTCTTATGATATTCTTCATGGTAATGCCTGCTT 1768
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
| ||||| ||||| || |||| || | || || | | || | ||| |||||||| |
Sbjct 1769 TAATAGGAGGTTTTGGTAATTTTTTATTGCCATTGTTAGTAGGAGGTCCAGATATGGCGT 1828
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCC 7718
|||| || ||||| ||||| |||||||||||| |||| ||
Sbjct 1829 TTCCTAGACTTAATAATATTAGTTTTTGATTATTACCACC 1868
>seq928
Length=40960
Score = 120 bits (132), Expect = 7e-22
Identities = 125/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| |||||| | |||||| || | |||||| |||||||||||
Sbjct 463 TTCTGGATGTTGTAGTCGGACAAAGTGCGCCCATCCTCCAACTGCTTGCCAGCGAAGATC 404
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| ||||| || ||||| || || || ||||||||||||||||| ||||||| ||
Sbjct 403 AGACGTTGCTGATCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGTCT 344
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||||| | || || || | ||||| |||||||||||
Sbjct 343 ATCGTGTCGCTAGACTCGACCTCGAGTGTGATGGTCTTGCCCGT 300
>seq1643
Length=2360
Score = 102 bits (112), Expect = 2e-16
Identities = 156/220 (71%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 7499 TTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558
||||||| ||||||||| | ||| ||| ||| ||| || | ||| |||||||
Sbjct 1360 TTATAAGATTAGAATTAAGCGGTCCTGGTGTACAA-TATATAGCAG--ATAATCAACTTT 1416
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
|||| |||| | || | || | | ||||||| |||||| | ||||| || |
Sbjct 1417 ACAATACTATTGTAACTTCTCACGGAATACTTATGATGTTCTTTGTAGTTATACCTGCAT 1476
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
| |||| ||||| || |||| || | || |||||| | || | ||| |||||||| |
Sbjct 1477 TAGTAGGAGGTTTTGGTAATTATTTATTACCATTAATGGTAGGAGGTCCAGATATGGCAT 1536
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCC 7718
|||| || ||||| ||||| ||||||||| || |||| ||
Sbjct 1537 TTCCTAGACTTAATAATATTAGTTTTTGACTATTACCACC 1576
Score = 87.8 bits (96), Expect = 4e-12
Identities = 81/100 (81%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| ||||||||||| ||||||||||||||||| || | ||||| || || || || |
Sbjct 1982 TTCCGGATGACCAAAGAATCAGAATAAATGTTGGTATAATATAGGGTCACCACCACCAGC 1923
Query 370732 TGGATCAAA-AAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
| ||||| |||| | ||||||||||||||||| |||||
Sbjct 1922 AGTTTCAAAGAAAGAT-GTATTAAAATTTCTATCTGTTAA 1884
>seq706
Length=64676
Score = 84.2 bits (92), Expect = 5e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| || || || |||||||||||||| || || || |||||||| ||||| ||||| ||
Sbjct 32795 GAAGATCTGGCCGTCAGTAATAGAGATGACGTTCGTGGGGATATAGGCAGACACATCGCC 32854
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575
|||| || || | ||||| || ||||| || || || ||||||
Sbjct 32855 ACCTTGAGTCTCAATGACAGGCAAAGCTGTAAGGGACCCTCCACCA 32900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192505484928002
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |