Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq990 140 8e-28 seq1644 138 3e-27 seq928 120 7e-22 seq1643 102 2e-16 seq706 84.2 5e-11 >seq990 Length=11377 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | ||| | || ||| || || | ||||| || | ||| || Sbjct 10779 ACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGT 10720 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 |||||||||||| || ||||| || |||||||| |||| ||||||||| ||||||||||| Sbjct 10719 TCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACC 10660 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||| ||||| |||||| || || || || | ||| || |||| Sbjct 10659 CTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAG 10600 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | |||||| | || | |||||| Sbjct 10599 AGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| ||||| || || ||| || ||||| | ||||| ||| || ||| Sbjct 10323 ACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGT 10264 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| || |||||||| || ||||| || || || || ||||| Sbjct 10263 GCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACC 10204 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| ||| ||||| ||||| || | || || || | Sbjct 10203 TTCCTTGTCTTGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAG 10144 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 10143 AGTGATGGTCTTGCCGGT 10126 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||||||||||||||| || ||||||||| | ||||| || | | || Sbjct 10551 ACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGT 10492 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || ||||| || |||||||| || | || || ||||| || || ||||| Sbjct 10491 GCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACC 10432 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || || |||||||| || ||||| ||||||||||| || | || || || | Sbjct 10431 CTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAG 10372 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| || ||||| |||| Sbjct 10371 TGTGATGGTTTTGCCGGTCA 10352 Score = 104 bits (114), Expect = 6e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | || || ||| ||| || || | |||||| || | ||| || Sbjct 11007 ACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGACAACGT 10948 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || ||||| | ||||| || |||||||| | || || ||||| || || || || Sbjct 10947 CCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGTATGCC 10888 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| ||||| |||||| || || || || | ||| || |||| Sbjct 10887 CTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATTCGACTTCTAG 10828 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | |||||| | ||| | ||||| Sbjct 10827 GGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 >seq1644 Length=3299 Score = 138 bits (152), Expect = 3e-27 Identities = 203/280 (73%), Gaps = 7/280 (3%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499 || |||||||||||||||| | |||||||| ||||| |||||| |||||| | | Sbjct 1594 ACATTATATTTAATATTTGCTTTATTTTCTGG-ATTATTAGGTACAGCTTTTTCTGTATT 1652 Query 7500 TATAAGGTTAGAATT-AGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 ||||| || ||||| ||| | ||| ||| ||| || || | ||| |||| | | Sbjct 1653 AATAAGATTGGAATTGAGCGG-TCCTGGTGTACAA-TACATAGCAG--ATAACCAATTAT 1708 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || |||||| || |||||||| || ||||||| ||||| | || ||||| | | Sbjct 1709 ATAATAGTATTATAACTGCGCATGCTATTCTTATGATATTCTTCATGGTAATGCCTGCTT 1768 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| ||||| || |||| || | || || | | || | ||| |||||||| | Sbjct 1769 TAATAGGAGGTTTTGGTAATTTTTTATTGCCATTGTTAGTAGGAGGTCCAGATATGGCGT 1828 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCC 7718 |||| || ||||| ||||| |||||||||||| |||| || Sbjct 1829 TTCCTAGACTTAATAATATTAGTTTTTGATTATTACCACC 1868 >seq928 Length=40960 Score = 120 bits (132), Expect = 7e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| |||||| | |||||| || | |||||| ||||||||||| Sbjct 463 TTCTGGATGTTGTAGTCGGACAAAGTGCGCCCATCCTCCAACTGCTTGCCAGCGAAGATC 404 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || ||||| || ||||| || || || ||||||||||||||||| ||||||| || Sbjct 403 AGACGTTGCTGATCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGTCT 344 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| | || || || | ||||| ||||||||||| Sbjct 343 ATCGTGTCGCTAGACTCGACCTCGAGTGTGATGGTCTTGCCCGT 300 >seq1643 Length=2360 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 7499 TTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 ||||||| ||||||||| | ||| ||| ||| ||| || | ||| ||||||| Sbjct 1360 TTATAAGATTAGAATTAAGCGGTCCTGGTGTACAA-TATATAGCAG--ATAATCAACTTT 1416 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 |||| |||| | || | || | | ||||||| |||||| | ||||| || | Sbjct 1417 ACAATACTATTGTAACTTCTCACGGAATACTTATGATGTTCTTTGTAGTTATACCTGCAT 1476 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | |||| ||||| || |||| || | || |||||| | || | ||| |||||||| | Sbjct 1477 TAGTAGGAGGTTTTGGTAATTATTTATTACCATTAATGGTAGGAGGTCCAGATATGGCAT 1536 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCC 7718 |||| || ||||| ||||| ||||||||| || |||| || Sbjct 1537 TTCCTAGACTTAATAATATTAGTTTTTGACTATTACCACC 1576 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||| ||||||||||||||||| || | ||||| || || || || | Sbjct 1982 TTCCGGATGACCAAAGAATCAGAATAAATGTTGGTATAATATAGGGTCACCACCACCAGC 1923 Query 370732 TGGATCAAA-AAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | ||||| |||| | ||||||||||||||||| ||||| Sbjct 1922 AGTTTCAAAGAAAGAT-GTATTAAAATTTCTATCTGTTAA 1884 >seq706 Length=64676 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || || |||||||||||||| || || || |||||||| ||||| ||||| || Sbjct 32795 GAAGATCTGGCCGTCAGTAATAGAGATGACGTTCGTGGGGATATAGGCAGACACATCGCC 32854 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 |||| || || | ||||| || ||||| || || || |||||| Sbjct 32855 ACCTTGAGTCTCAATGACAGGCAAAGCTGTAAGGGACCCTCCACCA 32900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192505484928002