Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 136 5e-27
seq959 111 2e-19
>seq1295
Length=44835
Score = 136 bits (150), Expect = 5e-27
Identities = 1097/1753 (63%), Gaps = 45/1753 (3%)
Strand=Plus/Plus
Query 76810 TTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGC 76869
||||||| || |||||||| |||||||| || |||| |||| ||| |||||||||||
Sbjct 16201 TTGTACGGAGGTAGTACATGCCAGTTTTGAGGCCCAATTTCCAACCGGTGAAATGCATGC 16260
Query 76870 TTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGA 76929
| || | || | || || || |||||||| | ||| ||| ||| ||||
Sbjct 16261 TGGTGATCTTACCCATGGTGGGTTCTTTCATGTGAATATTTAGCGAATGAGATTGGTCGA 16320
Query 76930 TGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAG 76989
|||| || || | ||||| ||||| | | ||| ||| |||||||| | ||
Sbjct 16321 TGAATGCGCCGCGGTCAGCAGCCATCTGCACAATATGACGCTGACTGATTTCCCATACAG 16380
Query 76990 TTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTATTT---TGAATGGAACCACCAT 77046
| ||| ||| ||||| |||||||||| ||| | | |||| || || ||||
Sbjct 16381 TCTTGTAAAGGGCTTTGAGGTCATCTGGAATGTTCGGGATGCGCTGAACAGACCCGCCAT 16440
Query 77047 CTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTC--T 77104
||| || || ||||| || | || ||| | || | | || || |
Sbjct 16441 CTGCAATGATGCGGTTCTTCATGTTGTCTGACCAGAGA--CCGCGATCGACAAGGTCCTT 16498
Query 77105 AAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATT 77164
|| | || || || | || || || |||| | || | |||| ||||||| ||
Sbjct 16499 TAGCAACCATGGGTTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTT 16558
Query 77165 ACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGG 77224
|| || || || | | |||||||| |||| || || | ||| || || |||||
Sbjct 16559 CGAAGTGTACGGCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGG 16618
Query 77225 CATAGGTGCCACCAATAAACTATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGAT 77283
||| || ||||||| || || | || || || ||| | || || | || ||
Sbjct 16619 CATGGGCGCCACCAGCAATGAGTTGCGGACTCCGTGCTGTGCA-ATCTTCGCCTTGAGTG 16677
Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343
| | ||| ||||| ||||| | || || |||| | |||||||| || || |
Sbjct 16678 AATCCCAGTCCCAGAGATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAGTTCCCCTT 16737
Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAAC 77403
| || || || ||| || || ||||| || || | || || ||||| ||
Sbjct 16738 TGCTGACAGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGG 16797
Query 77404 TCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 77463
|| ||||| ||||||| |||||| || ||||| |||| | || || | |||||
Sbjct 16798 AGGCCTCCAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGCCGTCTTGCTT 16857
Query 77464 CAATACTATCAAACGGATAATGTAAA-AG-AATAAAGGCATCTGCTAATCC-CTGAACTC 77520
| | || ||||| ||| || || || || ||||| || | || |||| |
Sbjct 16858 CGGGAGAGTCGAACGGC--ATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTGACACC 16915
Query 77521 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAAT 77580
||| ||||| || | || | |||| | ||||||||| | ||||||| |
Sbjct 16916 CAAG-CCAATCGGGCGGTGGCGTAAATTGCTCTTGCGAGCTTCTGGCACGGGATAATGGT 16974
Query 77581 TAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAA 77640
| || || ||||| || || | ||| | ||| || ||| || || | |||||
Sbjct 16975 TGATATCGATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCATGAAGTTTCT 17034
Query 77641 GAAAATCAAATCTTCCATCTATAACAAACATGTTC------AAAGCTATAGATGCTAGAT 77694
|||| | || ||| | || | || || ||||| | ||||| ||||
Sbjct 17035 TGAAATTGTAACTCTCATTTTCAATATCCACGTATGTGGGTAAAGCCAGGGATGCAAGAT 17094
Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754
| || || || ||||||| || | | || | || ||||| || || || || |
Sbjct 17095 TGCAGACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAG 17154
Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT-GCATGAGTCCTTATAAAGA 77813
| || || || || |||| |||||| ||| | || ||| | ||||||||
Sbjct 17155 AGCGAATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCAGCA-TCCTTATAGCAC 17213
Query 77814 ATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCT 77873
|| || ||||| || || || | || | |||| || | | ||| | | ||| ||
Sbjct 17214 ATGAAGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATA-GTTTCT-GCG 17271
Query 77874 TTTATCATAGATTTGTATC---GCCTCTCTCTTTCATATTGA--GTATATAGCCGTTCAA 77928
|| || | | | | | ||| | ||| ||||| ||| | |||| || |
Sbjct 17272 CACG-CACAGTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCC--TCGA 17328
Query 77929 ATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGT 77988
| | || || | |||||| | | ||||||||||| | || |||||||| | |||
Sbjct 17329 ACTTTTCCCCATACACATCAGCAAGGCCAGGGCATTCGTGCGGACACATCAAAGTCCATG 17388
Query 77989 CACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 78048
| | | || || |||||||| || | || || ||||| || || || || |
Sbjct 17389 TGCTGTTCTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGT 17448
Query 78049 CTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATAT 78108
| || | | |||||| || || ||||| || ||||| || | || |
Sbjct 17449 CGCGAGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGT 17508
Query 78109 CAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGAT 78168
| | |||||| || || ||||| || || | | || || || || || || || ||||
Sbjct 17509 CCGCATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGAT 17568
Query 78169 CTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTC 78228
| | ||| | || ||||| || || || | | ||| || | | ||||| || ||||
Sbjct 17569 CGACATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTC 17628
Query 78229 CATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT----ATTACTAATGGATATCCCT 78284
||||||| ||| |||||| || |||||||||| ||| || || | |||
Sbjct 17629 CATTTGTGCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTAC--ATTGAGA--CCT 17684
Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344
|| || || || |||| || || | ||||| ||||| || || || || |||||
Sbjct 17685 ATACCACCAGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCG 17744
Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTT--GATGATGAACAGTTC 78402
|||||||| ||| |||||| || | ||||| || || || | |||| || |
Sbjct 17745 ATACTGTCCTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGATG--GTGTGC 17802
Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATG 78462
| || | || | || || || ||||| || || | || | || | || ||||| |
Sbjct 17803 CGGCCATGAACAGGGTTGGTGAAGCATGAGTGAAGTACTTGTTCGACATGAGGTTGTAGG 17862
Query 78463 TTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522
| || || || | || ||||| || || || ||||| |||||||| | ||| |
Sbjct 17863 TCTCGATTGCAGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATGATCATGT 17922
Query 78523 GCTGAGGTCTTTC 78535
| || ||||| ||
Sbjct 17923 GTTGCGGTCTCTC 17935
>seq959
Length=28360
Score = 111 bits (122), Expect = 2e-19
Identities = 339/519 (65%), Gaps = 14/519 (3%)
Strand=Plus/Minus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
||||| ||||| || ||||||||||| || ||||| ||||||||||| || || | |||
Sbjct 16135 TCGTTGGAAAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCG 16076
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302
|| || | ||| ||||| ||||| ||||| || || || || || | ||| |
Sbjct 16075 AAGGAGCTAGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAAC 16016
Query 48303 CT-GGCTTC--GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359
| | ||| | | ||||| || | |||||||| |||||||| | || ||
Sbjct 16015 GTCGAATTCTTATCGCTAATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGG 15956
Query 48360 ATTGTTTCTATAGCATTAAAGAGA-AAGt---ttttttCATTGCTATCTTTAACGTAAGT 48415
|| | || || || || || ||| | || || |||| | || | | ||| ||
Sbjct 15955 ATGTTGTCGATGGCGTTGAATAGATACGTGCGTTGTTTCGGT----TCGCTGATGTAGGT 15900
Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTA 48475
|| || | ||| || | || ||||| ||||| || || ||||| || |||||
Sbjct 15899 GTCGATGAGCAGAGAGTAAGTCTCAGAGTGGATATTCTCCATCATGATCTGGAAGCCGTA 15840
Query 48476 AAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATT 48535
|| || | ||||| | || || ||||| | | ||||| || | | ||||| ||
Sbjct 15839 GAAGCAGCGTGCTTCGGGTATTTGCACCTCGGCTGAGAATCGCTCGACGAGGTTCTCGTT 15780
Query 48536 TACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTT 48595
|| || || || || |||||||| || | ||||| || || | ||||
Sbjct 15779 GACAATCCCGTCTGATGCCGCAAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTC 15720
Query 48596 GGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 48652
| ||| | || |||||||||| | ||||||||| | ||| | || || || ||
Sbjct 15719 ATCATTCAGGCGCTTGTTCCAGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGT 15660
Query 48653 CCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691
||| || || || || || || || ||||| | ||||||
Sbjct 15659 CCAGAAGGAGGCTTCCGCCTTCTTGTACATTTGCCATAT 15621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694654185905120
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