Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1295 136 5e-27 seq959 111 2e-19 >seq1295 Length=44835 Score = 136 bits (150), Expect = 5e-27 Identities = 1097/1753 (63%), Gaps = 45/1753 (3%) Strand=Plus/Plus Query 76810 TTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGC 76869 ||||||| || |||||||| |||||||| || |||| |||| ||| ||||||||||| Sbjct 16201 TTGTACGGAGGTAGTACATGCCAGTTTTGAGGCCCAATTTCCAACCGGTGAAATGCATGC 16260 Query 76870 TTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGA 76929 | || | || | || || || |||||||| | ||| ||| ||| |||| Sbjct 16261 TGGTGATCTTACCCATGGTGGGTTCTTTCATGTGAATATTTAGCGAATGAGATTGGTCGA 16320 Query 76930 TGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAG 76989 |||| || || | ||||| ||||| | | ||| ||| |||||||| | || Sbjct 16321 TGAATGCGCCGCGGTCAGCAGCCATCTGCACAATATGACGCTGACTGATTTCCCATACAG 16380 Query 76990 TTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTATTT---TGAATGGAACCACCAT 77046 | ||| ||| ||||| |||||||||| ||| | | |||| || || |||| Sbjct 16381 TCTTGTAAAGGGCTTTGAGGTCATCTGGAATGTTCGGGATGCGCTGAACAGACCCGCCAT 16440 Query 77047 CTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTC--T 77104 ||| || || ||||| || | || ||| | || | | || || | Sbjct 16441 CTGCAATGATGCGGTTCTTCATGTTGTCTGACCAGAGA--CCGCGATCGACAAGGTCCTT 16498 Query 77105 AAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATT 77164 || | || || || | || || || |||| | || | |||| ||||||| || Sbjct 16499 TAGCAACCATGGGTTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTT 16558 Query 77165 ACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGG 77224 || || || || | | |||||||| |||| || || | ||| || || ||||| Sbjct 16559 CGAAGTGTACGGCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGG 16618 Query 77225 CATAGGTGCCACCAATAAACTATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGAT 77283 ||| || ||||||| || || | || || || ||| | || || | || || Sbjct 16619 CATGGGCGCCACCAGCAATGAGTTGCGGACTCCGTGCTGTGCA-ATCTTCGCCTTGAGTG 16677 Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343 | | ||| ||||| ||||| | || || |||| | |||||||| || || | Sbjct 16678 AATCCCAGTCCCAGAGATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAGTTCCCCTT 16737 Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAAC 77403 | || || || ||| || || ||||| || || | || || ||||| || Sbjct 16738 TGCTGACAGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGG 16797 Query 77404 TCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 77463 || ||||| ||||||| |||||| || ||||| |||| | || || | ||||| Sbjct 16798 AGGCCTCCAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGCCGTCTTGCTT 16857 Query 77464 CAATACTATCAAACGGATAATGTAAA-AG-AATAAAGGCATCTGCTAATCC-CTGAACTC 77520 | | || ||||| ||| || || || || ||||| || | || |||| | Sbjct 16858 CGGGAGAGTCGAACGGC--ATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTGACACC 16915 Query 77521 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAAT 77580 ||| ||||| || | || | |||| | ||||||||| | ||||||| | Sbjct 16916 CAAG-CCAATCGGGCGGTGGCGTAAATTGCTCTTGCGAGCTTCTGGCACGGGATAATGGT 16974 Query 77581 TAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAA 77640 | || || ||||| || || | ||| | ||| || ||| || || | ||||| Sbjct 16975 TGATATCGATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCATGAAGTTTCT 17034 Query 77641 GAAAATCAAATCTTCCATCTATAACAAACATGTTC------AAAGCTATAGATGCTAGAT 77694 |||| | || ||| | || | || || ||||| | ||||| |||| Sbjct 17035 TGAAATTGTAACTCTCATTTTCAATATCCACGTATGTGGGTAAAGCCAGGGATGCAAGAT 17094 Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754 | || || || ||||||| || | | || | || ||||| || || || || | Sbjct 17095 TGCAGACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAG 17154 Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT-GCATGAGTCCTTATAAAGA 77813 | || || || || |||| |||||| ||| | || ||| | |||||||| Sbjct 17155 AGCGAATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCAGCA-TCCTTATAGCAC 17213 Query 77814 ATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCT 77873 || || ||||| || || || | || | |||| || | | ||| | | ||| || Sbjct 17214 ATGAAGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATA-GTTTCT-GCG 17271 Query 77874 TTTATCATAGATTTGTATC---GCCTCTCTCTTTCATATTGA--GTATATAGCCGTTCAA 77928 || || | | | | | ||| | ||| ||||| ||| | |||| || | Sbjct 17272 CACG-CACAGTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCC--TCGA 17328 Query 77929 ATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGT 77988 | | || || | |||||| | | ||||||||||| | || |||||||| | ||| Sbjct 17329 ACTTTTCCCCATACACATCAGCAAGGCCAGGGCATTCGTGCGGACACATCAAAGTCCATG 17388 Query 77989 CACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 78048 | | | || || |||||||| || | || || ||||| || || || || | Sbjct 17389 TGCTGTTCTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGT 17448 Query 78049 CTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATAT 78108 | || | | |||||| || || ||||| || ||||| || | || | Sbjct 17449 CGCGAGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGT 17508 Query 78109 CAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGAT 78168 | | |||||| || || ||||| || || | | || || || || || || || |||| Sbjct 17509 CCGCATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGAT 17568 Query 78169 CTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTC 78228 | | ||| | || ||||| || || || | | ||| || | | ||||| || |||| Sbjct 17569 CGACATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTC 17628 Query 78229 CATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT----ATTACTAATGGATATCCCT 78284 ||||||| ||| |||||| || |||||||||| ||| || || | ||| Sbjct 17629 CATTTGTGCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTAC--ATTGAGA--CCT 17684 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 || || || || |||| || || | ||||| ||||| || || || || ||||| Sbjct 17685 ATACCACCAGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCG 17744 Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTT--GATGATGAACAGTTC 78402 |||||||| ||| |||||| || | ||||| || || || | |||| || | Sbjct 17745 ATACTGTCCTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGATG--GTGTGC 17802 Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATG 78462 | || | || | || || || ||||| || || | || | || | || ||||| | Sbjct 17803 CGGCCATGAACAGGGTTGGTGAAGCATGAGTGAAGTACTTGTTCGACATGAGGTTGTAGG 17862 Query 78463 TTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522 | || || || | || ||||| || || || ||||| |||||||| | ||| | Sbjct 17863 TCTCGATTGCAGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATGATCATGT 17922 Query 78523 GCTGAGGTCTTTC 78535 | || ||||| || Sbjct 17923 GTTGCGGTCTCTC 17935 >seq959 Length=28360 Score = 111 bits (122), Expect = 2e-19 Identities = 339/519 (65%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| ||||| || ||||||||||| || ||||| ||||||||||| || || | ||| Sbjct 16135 TCGTTGGAAAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCG 16076 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || | ||| ||||| ||||| ||||| || || || || || | ||| | Sbjct 16075 AAGGAGCTAGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAAC 16016 Query 48303 CT-GGCTTC--GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | | ||| | | ||||| || | |||||||| |||||||| | || || Sbjct 16015 GTCGAATTCTTATCGCTAATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGG 15956 Query 48360 ATTGTTTCTATAGCATTAAAGAGA-AAGt---ttttttCATTGCTATCTTTAACGTAAGT 48415 || | || || || || || ||| | || || |||| | || | | ||| || Sbjct 15955 ATGTTGTCGATGGCGTTGAATAGATACGTGCGTTGTTTCGGT----TCGCTGATGTAGGT 15900 Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTA 48475 || || | ||| || | || ||||| ||||| || || ||||| || ||||| Sbjct 15899 GTCGATGAGCAGAGAGTAAGTCTCAGAGTGGATATTCTCCATCATGATCTGGAAGCCGTA 15840 Query 48476 AAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATT 48535 || || | ||||| | || || ||||| | | ||||| || | | ||||| || Sbjct 15839 GAAGCAGCGTGCTTCGGGTATTTGCACCTCGGCTGAGAATCGCTCGACGAGGTTCTCGTT 15780 Query 48536 TACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTT 48595 || || || || || |||||||| || | ||||| || || | |||| Sbjct 15779 GACAATCCCGTCTGATGCCGCAAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTC 15720 Query 48596 GGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 48652 | ||| | || |||||||||| | ||||||||| | ||| | || || || || Sbjct 15719 ATCATTCAGGCGCTTGTTCCAGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGT 15660 Query 48653 CCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 ||| || || || || || || || ||||| | |||||| Sbjct 15659 CCAGAAGGAGGCTTCCGCCTTCTTGTACATTTGCCATAT 15621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694654185905120