Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1295 154 2e-32 seq959 122 1e-22 >seq1295 Length=44835 Score = 154 bits (170), Expect = 2e-32 Identities = 1166/1854 (63%), Gaps = 62/1854 (3%) Strand=Plus/Plus Query 75373 CAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 |||| ||||| || || || | || || | ||||||| || |||||||| ||||||| Sbjct 16168 CAACAGTGAATTGGATCGGTGCCGAGGCCGCCATTGTACGGAGGTAGTACATGCCAGTTT 16227 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 | || |||| |||| ||| |||||||||||| || | || | || || Sbjct 16228 TGAGGCCCAATTTCCAACCGGTGAAATGCATGCTGGTGATCTTACCCATGGTGGGTTCTT 16287 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 || |||||||| | ||| ||| ||| |||||||| || || | ||||| ||||| | Sbjct 16288 TCATGTGAATATTTAGCGAATGAGATTGGTCGATGAATGCGCCGCGGTCAGCAGCCATCT 16347 Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611 | ||| ||| |||||||| | ||| ||| ||| ||||| ||||||| Sbjct 16348 GCACAATATGACGCTGACTGATTTCCCATACAGTCTTGTAAAGGGCTTTGAGGTCATCTG 16407 Query 75612 GAAGATTTGTATTT---TGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT 75668 ||| || | | |||| || |||||||| | || || ||||| || | | Sbjct 16408 GAATGTTCGGGATGCGCTGAACAGACCCGCCATCTGCAATGATGCGGTTCTTCATGTTGT 16467 Query 75669 CATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATT 75728 | ||| | | ||| | | | || | || || || | || || | Sbjct 16468 CTGACCAGAGACCGCGATCGACAAGGTCCTTTAGCAACCATGGGTTGACCACCTGGAACT 16527 Query 75729 CTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGT 75788 | |||| | || | ||| ||||||| || || || || || | | |||||||| Sbjct 16528 CGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACGGCTCGAAACATTCATTGA 16587 Query 75789 TTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGA 75848 |||| || || | ||| || || || ||||| || ||||||| || || | || Sbjct 16588 AGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCACCAGCAATGAGTTGCGGA 16647 Query 75849 GACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACA 75907 || || ||| | || || | || || | | ||| ||||| ||||| | ||| Sbjct 16648 CTCCGTGCTGTGCA-ATCTTCGCCTTGAGTGAATCCCAGTCCCAGAGATCGGTTGGCGTC 16706 Query 75908 ACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCG 75967 || |||| | |||||||| || || ||||| || || ||| || || || Sbjct 16707 ACGCCCCACATGTCGTATTGCAGTTCCCCTTTGCTGACAGGGGAGCCAGCGTAAGTCTCA 16766 Query 75968 TAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTT 76027 || | ||| | || || |||||||| ||||| ||||| |||| |||||| || Sbjct 16767 TATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTCCAACGCTCCGTGATAAATGGTC 16826 Query 76028 TCGAAAATCTTCTTATTAAGA--TCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAA- 76084 ||||| |||| | || || |||||| ||| || || || || ||| || Sbjct 16827 TCGAAGATCTGAATGTTTAGCCGTCTTGC--TTCGGGAGAGTCGAACGGC--ATGCGAAG 16882 Query 76085 AG-AATAAATGCATCTGCTAGTCC-CTGAACTCCAATACCAATAGGTCTATGTCTCTTAT 76142 || || || ||||| || || || |||| |||| ||||| || | || | || Sbjct 16883 AGCAAGGAAAGCATCGGCCAGGCCACTGACACCCAAG-CCAATCGGGCGGTGGCGTAAAT 16941 Query 76143 TGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTC 76202 || | ||||||||| | || |||| || ||||| ||||| || || | ||| Sbjct 16942 TGCTCTTGCGAGCTTCTGGCACGGGATAATGGTTGATATCGATAATCTTGTTCAAGTTTT 17001 Query 76203 TGACAACTACTTTAACCACGTCCTTTAGTTT---GAGA----AAATCAAATTTTCCATCT 76255 | ||| || ||| || || | ||||| || | || || |||||| || Sbjct 17002 TCGTAACCACCTTAGTAACTTCATGAAGTTTCTTGAAATTGTAACTCTCATTTTCAAT-- 17059 Query 76256 ATCACAAACATAT---TAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 ||| || || | ||| ||| | ||||| ||||| || || || ||||||| || Sbjct 17060 ATC-CACGTATGTGGGTAA-AGCCAGGGATGCAAGATTGCAGACAGCGACCTCATCAGG- 17116 Query 76313 TTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 |||| || | || ||||| ||||| || || | | || || ||||| ||| Sbjct 17117 --GGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCGAATGGTACCAAGGTTT 17174 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACA--AACGGAGTTCCAGTTT 76427 | |||||| ||| |||| | |||||||| | ||| || ||||| || || | Sbjct 17175 TTCTGGTTGGATTTTCTGTTTGCAGCATCCTTATA--GCACATGAAGGGAGTACCTGTCT 17232 Query 76428 CAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATC 76487 | | || | |||| || | | ||| | | ||| || | || | | | Sbjct 17233 CCGTTTGAGCCTCGAGGATTGCGTACCATA-GTTTCT-GCGCACGC-ACAGTCTCGCGAC 17289 Query 76488 ---GCTTCTCTCTTTCATATTGT--GTATATAACCGTTCAAATTCATCTCCCCAAACATC 76542 | ||| | ||| |||||| ||| | | || || || | || || | ||||| Sbjct 17290 CACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCC--TCGAACTTTTCCCCATACACATC 17347 Query 76543 ATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCG 76602 | | | ||||| ||||| | |||||||||||| | ||| | | | || ||||| Sbjct 17348 AGCAAGGCCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCG 17407 Query 76603 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 |||||| || | || || ||||| || || || || || || | | |||||| Sbjct 17408 TTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCACGGACTTCTTC 17467 Query 76663 ATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAG 76722 || || ||||| || || ||||| | || || | |||||| || || || Sbjct 17468 TTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAG 17527 Query 76723 ATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTT 76782 ||| || || | |||| || || || || || || ||||| | ||| | |||||||| Sbjct 17528 ATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTT 17587 Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 || || || | | ||| || | | ||||| || || |||||||| ||| |||||| Sbjct 17588 GTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATA 17647 Query 76843 ACTTCCACATGCACGAATAT----TACTAATAGATAGGCCTATTCCTCCTGCCATTTTAG 76898 || ||| ||||| ||| || || | ||||| || || || | || | Sbjct 17648 CGACCCTGTTGCGCGAATGCGGTGTAC--ATTGAGA--CCTATACCACCAGCATTCTTTG 17703 Query 76899 AGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT 76958 |||| | || || ||||| |||||||| |||||||| ||||| || ||| |||||| Sbjct 17704 AGATCATGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGT 17763 Query 76959 TAAGAAGAAAACAGCTAGACATTTGAT--GATGAACAGTTCCTGCATTAAACAATGTAGG 77016 || | ||||| || || ||| |||| || || || | |||| || || Sbjct 17764 CAATCAAGAAACATGAAGCCAATTGGGCGGATGGT--GTGCCGGCCATGAACAGGGTTGG 17821 Query 77017 AGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTAT 77076 || ||||||||||| | || | || | || ||||| || || || | || || || Sbjct 17822 TGAAGCATGAGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGAT 17881 Query 77077 ATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGT 77136 || || || || || || |||||||| | ||| || || |||| ||| || | Sbjct 17882 GTCTTCGCCGTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTCTGCAAT 17941 Query 77137 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 77190 || | ||| ||| | ||||| ||| | ||| || || |||||||| Sbjct 17942 TTTCCCGTCAATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGAAGCCAAAATA 17995 >seq959 Length=28360 Score = 122 bits (134), Expect = 1e-22 Identities = 341/517 (66%), Gaps = 10/517 (2%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| ||||| || || || ||||| || ||||||||||||||||| || || | ||| Sbjct 16135 TCGTTGGAAAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCG 16076 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 || || | ||| ||||| ||||| |||||||| ||||| || || || | ||| | Sbjct 16075 AAGGAGCTAGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAAC 16016 Query 46792 CTGGCATCATTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | | || |||| |||||| | | |||||||| ||||| || | || || Sbjct 16015 GTCGAATTCTTATCGCTAATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGG 15956 Query 46849 ATTGTTTCTATAGCATTAAAGAGA-AAGtttttttCATCACTATCTTTAACATATGTATC 46907 || | || || || || || ||| | || || || | || | | || || || Sbjct 15955 ATGTTGTCGATGGCGTTGAATAGATACGTGCGTTGTTTCGGT-TCGCTGATGTAGGTGTC 15897 Query 46908 TATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 || | ||| || | || || || || || || || ||||| || ||||| || Sbjct 15896 GATGAGCAGAGAGTAAGTCTCAGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAA 15837 Query 46968 ACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCA 47026 || | |||||| | || || ||||| | | ||||| || ||| | ||||| || | Sbjct 15836 GCAGCGTGCTTCGGGTATTTGCACCTCGGCTGAGAATCGCTC-GACGAGGTTCTCGTTGA 15778 Query 47027 CTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGG 47086 | || || || || |||||||| || | ||||| || || | || || Sbjct 15777 CAATCCCGTCTGATGCCGCAAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCAT 15718 Query 47087 TAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 | ||| | || |||||||||| | ||||||||| | ||| | || || || |||| Sbjct 15717 CATTCAGGCGCTTGTTCCAGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCC 15658 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 |||| || || || || || || ||||| | |||||| Sbjct 15657 AGAAGGAGGCTTCCGCCTTCTTGTACATTTGCCATAT 15621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712919401642560