Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq990 107 4e-18 seq928 86.0 1e-11 >seq990 Length=11377 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || ||| |||||||| |||||||| || | | || | ||||| Sbjct 10541 AGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCC 10482 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || ||||| || | | ||||||||||| | ||| || || || ||| Sbjct 10481 TCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCT 10422 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||| || | || | | |||| || ||| || ||||| || || ||| Sbjct 10421 TGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTT 10362 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| || |||| |||||| Sbjct 10361 TTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || ||| ||||| |||||||| ||| | ||| | |||||| Sbjct 10313 AGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCT 10254 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||| || | | ||| |||||||| ||| Sbjct 10253 TCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTCT 10194 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | |||| || ||| || || ||||| || || Sbjct 10193 TGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTC 10134 Query 152073 TTGCCCGTGA 152082 ||||| |||| Sbjct 10133 TTGCCGGTGA 10124 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 || || || |||||||| || | || |||||||||||||| || || ||||||||| Sbjct 10748 TCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAG 10689 Query 151974 ATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTC 152033 || || || || ||||| | || || || || || |||||||| || || || | Sbjct 10688 ATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTG 10629 Query 152034 TCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 |||| | || ||| || ||||| ||||| || || ||||| |||||||| || Sbjct 10628 TCTATCGTATCACTTGA---TTCGACTTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTA 10572 Query 152091 ACGAAGACCTGCAT 152104 || |||| ||||| Sbjct 10571 ACAAAGATTTGCAT 10558 >seq928 Length=40960 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| ||||| | |||||| || | || || |||||||| Sbjct 463 TTCTGGATGTTGTAGTCGGACAAAGTGCGCCCATCCTCCAACTGCTTGCCAGCGAAGATC 404 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||| || | | ||| || ||||| ||||| || || || ||| | ||| Sbjct 403 AGACGTTGCTGATCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGTCT 344 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||| | ||| || || || || || || ||||||||||| ||||| |||||| Sbjct 343 ATCGTGTCGCTAGACTCGACCTCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153795919657293