Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq990 178 3e-39 seq928 120 6e-22 seq1047 104 5e-17 >seq990 Length=11377 Score = 178 bits (196), Expect = 3e-39 Identities = 164/205 (80%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| ||||| ||||| | |||||| || ||||| ||||||||||| Sbjct 10329 ACCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCT 10270 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || ||||| || ||||| ||||||| ||||| || || || Sbjct 10269 CAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGG 10210 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||| ||||||||||| ||||| ||| || || ||||||| |||||||| | |||| Sbjct 10209 GATACCTTCCTTGTCTTGAATCTT-GCTCTTGACATTATCGATCGTGTCCGACGACTCGA 10151 Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075 | ||||||||||| ||||| || || Sbjct 10150 CCTCGAGAGTGATGGTCTTGCCGGT 10126 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || ||||||||||| ||||||||||||| Sbjct 10557 ACCACCACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGA 10498 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || ||||| || || || ||||| || || ||||| || Sbjct 10497 GAGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGG 10438 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| || |||||||| || | ||| ||| | ||||| ||||| || | || || Sbjct 10437 GATACCCTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAAC 10378 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || |||| ||||| || || |||||||| Sbjct 10377 CTCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| ||||| || ||||| || || ||||||||||| | Sbjct 10785 ACCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGA 10726 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| | ||||| || ||||| || ||||| ||||| | | |||||||||| ||| Sbjct 10725 CAACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGG 10666 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||| |||||||| ||||| | || ||| | || || || || | |||||| Sbjct 10665 AATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGAC 10606 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| ||||| || || | ||| ||||| || || ||||| Sbjct 10605 TTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || |||| ||| | |||||||| || || || |||||||| | Sbjct 11013 ACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGA 10954 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| | || || || | ||| || || || ||||| || | || ||||| || Sbjct 10953 CAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGG 10894 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||| ||||| | || ||| | || || || || | |||||| Sbjct 10893 TATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATTCGAC 10834 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||| ||||| || || | ||| || ||||| |||||||| Sbjct 10833 TTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 >seq928 Length=40960 Score = 120 bits (132), Expect = 6e-22 Identities = 136/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | | ||||| |||||||| | || || || || |||||| Sbjct 463 TTCTGGATGTTGTAGTCGGACAAAGTGCGCCCATCCTCCAACTGCTTGCCAGCGAAGATC 404 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030 | |||||| || || || || |||||||||||||||||| ||||| || || | || Sbjct 403 AGACGTTGCTGATCGGGTGGGATGCCCTCCTTGTCTTGGATC-TTGCTCTTCACATTGTC 345 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || ||||| ||||| ||||| ||||| ||||| | ||||| ||||| Sbjct 344 TATCGTGTCGCTAGACTCGACCTCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 285 >seq1047 Length=44052 Score = 104 bits (114), Expect = 5e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||| ||| || |||||||| | ||||| || || || || || || || | Sbjct 5376 CCACCACGCAAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAG 5435 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || ||||||||||||| ||| || ||||| || Sbjct 5436 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG 5495 Query 282993 ATACCCTCCTTGTCT 283007 |||||||| |||||| Sbjct 5496 ATACCCTCTTTGTCT 5510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046716628704682