Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq990 107 1e-18 seq928 104 2e-17 seq1047 93.3 3e-14 >seq990 Length=11377 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || || || |||||||||||||||||||| |||||||| || Sbjct 10332 CATACCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTC 10273 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || || || ||||| ||||| ||||||| || |||||||||| Sbjct 10272 GCTCAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGG 10213 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||||||| || ||||| ||| | | | || ||||| | || || Sbjct 10212 AGGGATACCTTCCTTGTCTTGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTC 10153 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGA 44315 ||||| | || || ||||| || |||| Sbjct 10152 GACCTCGAGAGTGATGGTCTTGCCGGTGA 10124 >seq928 Length=40960 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| | |||| | || |||| |||||| || || |||| Sbjct 465 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGCCCATCCTCCAACTGCTTGCCAGCGAAGA 406 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| ||| |||||||| | || | || ||||| || ||||| ||||| | Sbjct 405 TCAGACGTTGCTGATCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGT 346 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 |||| |||||| || || ||||| | || || ||||| |||||||||||||| |||| Sbjct 345 CTATCGTGTCGCTAGACTCGACCTCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 286 Query 44328 AG 44329 || Sbjct 285 AG 284 >seq1047 Length=44052 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| ||||| ||||||||||| || || || ||||||| ||| ||| | || || Sbjct 5394 ACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAGAGGGTGCGACCATCCTCG 5453 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||||||| ||||||||||||| ||||||||| || | || | ||| || || || Sbjct 5454 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGGATACCCTCTTTGTC 5509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359983016034411