Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq990 134 3e-26 seq1047 86.0 2e-11 >seq990 Length=11377 Score = 134 bits (148), Expect = 3e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||| |||||||| || || ||||| ||||| || ||||| Sbjct 10124 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCGGACACGATCGATAATGTCAAGA 10183 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||| ||||| ||||| |||||||| || |||||||| || ||||||||||| | Sbjct 10184 GCAAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAGCAACGCCTGATCTTCGCCGGCA 10243 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || ||||||||||| | ||||| ||| || ||| | ||||| || || || | Sbjct 10244 AGCAACTCGAAGATGGCCGCACTCTGAGCGACTACAACATTCAAAAGGAGAGCACGCTTC 10303 Query 178123 ATCTTGT 178129 ||||||| Sbjct 10304 ATCTTGT 10310 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || ||||| ||||| || ||||| || || ||| Sbjct 10333 CAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCCGAC 10392 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| || || || || ||||| || ||||||||||||||||| Sbjct 10393 ACCATCGACAACGTGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAGCAG 10452 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || |||||||| || ||||| | || || | || || ||| | Sbjct 10453 CGCTTGATTTTCGCTGGCAAACAGCTTGAGGATGGCCGCACCCTCTCTGACTACAACATT 10512 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||| || || || ||||| Sbjct 10513 CAAAAAGAAAGTACCCTCCACCTTGT 10538 Score = 109 bits (120), Expect = 1e-18 Identities = 140/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 ||||| || || ||||||||||| || || || ||||| || || || ||| ||| Sbjct 10561 CAAATCTTTGTTAAAACTCTCACCGGCAAGACCATCACTCTAGAAGTCGAA---TCAAGT 10617 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || || || || ||||| || |||||||| |||||||| || || || || ||||| Sbjct 10618 GATACGATAGACAACGTGAAGTCGAAGATTCAAGACAAAGAGGGTATTCCGCCTGACCAA 10677 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||| |||| ||||||||||| || || || |||||||| || || | | || || ||| Sbjct 10678 CAAAGACTAATCTTCGCCGGCAAGCAACTGGAAGATGGGAGAACGTTGTCAGACTACAAC 10737 Query 178101 GTCCAAAAAGAA 178112 | || || ||| Sbjct 10738 ATTCAGAAGGAA 10749 Score = 98.7 bits (108), Expect = 2e-15 Identities = 121/164 (74%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| ||||||||||| || || || |||||||| || || ||| ||| Sbjct 10789 CAGATCTTCGTCAAAACTCTCACCGGCAAGACCATCACCCTAGAAGTCGAATCGAGC--- 10845 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || || || || ||||| || |||||||| ||||| || || || ||||| |||||| Sbjct 10846 GATACGATTGACAACGTGAAGTCGAAGATTCAAGACAAGGAGGGCATACCTCCAGACCAG 10905 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGAC 178084 || || | |||||||| || || || | ||||| || ||||| Sbjct 10906 CAGAGATTAATCTTCGCGGGCAAGCAATTGGAAGACGGTAGGAC 10949 >seq1047 Length=44052 Score = 86.0 bits (94), Expect = 2e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 |||||||| || ||||| ||||||||||| || || ||||| ||||| || |||||||| Sbjct 5509 GACAAAGAGGGTATCCCACCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAG 5450 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| | || || |||||||||| | || || || || || ||||| ||| Sbjct 5449 GATGGTCGCACCCTCTCCGATTATAATATTCAGAAGGAGAGCACTCTTCATCTGGTT 5393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203705243417502