Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acremonium_20furcatum_20[genbank_20GCA_5F001599815.1_202016-03-01] 9 sequences; 40,320,693 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5 159 5e-34 seq4 141 1e-28 >seq5 Length=5645814 Score = 159 bits (176), Expect = 5e-34 Identities = 343/502 (68%), Gaps = 23/502 (5%) Strand=Plus/Minus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || ||||| | |||| ||||| |||||| ||| | ||||| | | ||| Sbjct 2728414 ATCCGCAAGAAGGCCGATTGGGCTATTCGCTGGATCACCGACAAGGAGTCTACCTTCGCG 2728355 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | ||||| || ||||| ||||| ||||| |||||||| ||| |||||| || Sbjct 2728354 TCGCGTCTGGTCGCTTTCGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCGTCC 2728295 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||||||||||||||| || |||||||| ||||| |||||| | || Sbjct 2728294 ATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTTTCCAACGAGCTCATC 2728235 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT--ATCTG 125597 || || |||||||| || ||| |||||| ||| || || || || || || | | Sbjct 2728234 TCGCGTGACGAGGGTCTCCACACTGACTTCGCCTGCCTGCTCTTCTCCCACCTCAACAAG 2728175 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGA-AAAGGTCATCAACATTGTAACCGATGCCGTGAG 125656 || ||||| ||| | || ||||| ||| ||||| | | |||||| || | Sbjct 2728174 CG-CCCGA--GCAAA--CA--GATGATCCAGGACATCATCGT------CGATGCTGTCAA 2728128 Query 125657 GATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAA 125716 || || || ||||| || |||||| | || || | | || | |||||||||| | Sbjct 2728127 AATCGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGGTCTGCTCGGCATGAACTCTAC 2728068 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC-- 125774 || ||| ||||||| |||||||| || || ||||| || || | ||| Sbjct 2728067 TCTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTCCT---CGTCGCCCTCGGCAA 2728011 Query 125775 CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833 || ||| | ||||| | || || ||||| || |||||| | ||| || || | || Sbjct 2728010 CGAGAAGGTCTACAAGGTCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGG 2727951 Query 125834 TAAGACCAACTTTTTCGAGAAG 125855 ||||||||||| ||||||||| Sbjct 2727950 CAAGACCAACTTCTTCGAGAAG 2727929 Score = 127 bits (140), Expect = 3e-24 Identities = 207/290 (71%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||||||||| ||||| | ||| ||| |||| ||| Sbjct 2728814 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCCGAGGAGATCGACCTG 2728755 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||||||| | || | | || || |||| | | || || || Sbjct 2728754 TCCAAGGATCTCCACGATTGGAACAACAAGATCAAC-GATGATGAGAAATACTTCATCTC 2728696 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||||| |||| ||||| |||| |||||| || || |||||||| || || || || | Sbjct 2728695 TCACATCCTGGCTTTCTTCGCCGCCTCCGACGGCATTGTCAACGAGAACCTCGTCGA-GC 2728637 Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 | || ||| | ||||| |||| ||| ||||| ||||| ||||| |||||| Sbjct 2728636 GTTTTAGCGGCGAGGTCCAGATTCCCGAGG-CTCGCTGCTTCTACGGCTTCCAGATCATG 2728578 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || |||||| | ||||| || | ||||| || ||||| | ||||| Sbjct 2728577 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGATACCTACAT 2728528 >seq4 Length=5903436 Score = 141 bits (156), Expect = 1e-28 Identities = 302/446 (68%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || |||||| | ||| ||||| | || || |||||||| || Sbjct 5783235 CAGGGTGGCAACAAGCGCCCCGGCGCTTTCGCCATCTACCTTGAGCCGTGGCACGCTGAT 5783294 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || ||||||| ||| ||| || |||| || || | || Sbjct 5783295 GTCTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCTCGCGAT 5783354 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||| | || ||| | ||||||||||| ||| | | ||| || Sbjct 5783355 CTATTCCTCGCCCTCTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGAC 5783414 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || || ||||| |||| |||| ||||| ||||| Sbjct 5783415 TGGACTCTGATGTGCCCCAACGAGTGCCCTGGTCTCGCCGACTGCTATGGCGACGAGTTC 5783474 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| |||||| | | |||| | || |||| | || | | | Sbjct 5783475 GAGGCTCTGTACGAAAAGTACGAGAAGGCGGGCAAGGGTCGGAAGACCA-TC-AGGGCCC 5783532 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | ||| ||| |||||||| | || | ||| || | Sbjct 5783533 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCCTTCATGCTTT 5783592 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| || || | || |||||||| || | ||||||||| |||||| Sbjct 5783593 ACAAGGACCACGCCAACAGGAAGAGCAACCAGAAGAACCTCGGCACCATCCGCAGCTCCA 5783652 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 | ||||||||||| || | |||||| Sbjct 5783653 ACCTGTGCACGGAGATCATCGAGTAC 5783678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059116630840