Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acremonium_20furcatum_20[genbank_20GCA_5F001599815.1_202016-03-01] 9 sequences; 40,320,693 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 seq6 102 8e-17 seq3 100 3e-16 >seq5 Length=5645814 Score = 104 bits (114), Expect = 2e-17 Identities = 293/447 (66%), Gaps = 25/447 (6%) Strand=Plus/Minus Query 52402 TGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTT 52461 |||| || ||||| || ||||| | || || ||| |||||| ||||||| | Sbjct 2728347 TGGTCGCTTTCGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCGTCCATCTTCT 2728288 Query 52462 ACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCG 52521 | || | | ||| | |||||||||||||| || ||||||| | || ||||| | Sbjct 2728287 GGCTCAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCGCGTG 2728228 Query 52522 ACGAAGGACTGCACACGGACTTTGCGTGCCT---------CTACTACAAGACGCGCGTGA 52572 |||| || || ||||| ||||| || ||||| | || ||| | |||| || Sbjct 2728227 ACGAGGGTCTCCACACTGACTTCGCCTGCCTGCTCTTCTCCCACCTCAACAAGCGCCCGA 2728168 Query 52573 CCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAA 52632 | || | ||| ||||| | ||| || || || || ||||| Sbjct 2728167 GCAAACA----GAT--------GATCCAGGACATCATCGTCGATGCTGTCAAAATCGAGC 2728120 Query 52633 AGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC-CATG 52691 ||||||| | || | || || || || ||||| ||||||||| | | || |||| Sbjct 2728119 AGGAGTTCCTCACCGAAGCTCTCCCCTGCGGTCTGCTCGGCATGAACTCT-ACTCTCATG 2728061 Query 52692 TGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTA 52750 ||||||| |||||||| || || ||||| | || ||||| || | | ||| Sbjct 2728060 AAGCAGTACATTGAGTTTGTTGCCGACCGTCTCCTCGTCGCCCTCGG-CAACGAGAAGGT 2728002 Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810 || ||| | ||| || || || || ||| | ||||| || || | ||||||||||| Sbjct 2728001 CTACAAGGTCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAA 2727942 Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| ||||||||||| |||| ||| || Sbjct 2727941 CTTCTTCGAGAAGCGTGTCGCCGACTA 2727915 >seq6 Length=5170228 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||||||||| || ||||| | Sbjct 5051879 GACTCCTTCTGGATGTTGTAGTCGCTTAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCG 5051820 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| || || || || || || || ||||| ||| || || | Sbjct 5051819 AAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 5051760 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | ||||||||||| | || | || || ||||||||||| || Sbjct 5051759 TTGTCAATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTG 5051700 Query 138601 ACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 5051699 ACGAAGATCTGCATGG 5051684 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||||||||| || ||||| | Sbjct 5110731 GACTCCTTCTGGATGTTGTAGTCGCTTAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCG 5110790 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| || || || || || || || ||||| ||| || || | Sbjct 5110791 AAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 5110850 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | ||||||||||| | || | || || ||||||||||| || Sbjct 5110851 TTGTCAATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTG 5110910 Query 138601 ACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 5110911 ACGAAGATCTGCATGG 5110926 >seq3 Length=5970797 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||| || || || |||| Sbjct 630942 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCG 631001 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 631002 AAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 631061 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| |||||||||||| | || | || ||||| || || || || Sbjct 631062 TTG-TCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTT 631120 Query 138600 TACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 631121 GACGAAGATCTGCATGG 631137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262344170480