Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acremonium_20furcatum_20[genbank_20GCA_5F001599815.1_202016-03-01] 9 sequences; 40,320,693 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 seq6 87.8 2e-12 >seq3 Length=5970797 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || || ||| ||| || || || || || |||| || || || | Sbjct 630920 GCGCAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 630979 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| |||||||| ||||| || || || || ||||||||||||| ||| | || ||| || Sbjct 630980 GTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 631039 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || |||| | | | || ||| ||||||||| || | ||||| Sbjct 631040 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGAT 631099 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || ||||| || || || || ||||| ||||| Sbjct 631100 AGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 631135 >seq6 Length=5170228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || |||||| ||| || || || || || ||| || || || |||| || Sbjct 5051894 ACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTTAGGGTGCGACCGTCCTCG 5051835 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || ||||||||||| |||| ||| | || ||| |||||| | Sbjct 5051834 AGCTGCTTACCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 5051775 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | ||||| |||||||| || | ||||| | || Sbjct 5051774 ATCTTGGACTTGA-CGTTGTCAATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTT 5051716 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 5051715 GCCAGTCAGAGTCTTGACGAAGATCTGCAT 5051686 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || |||||| ||| || || || || || ||| || || || |||| || Sbjct 5110716 ACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTTAGGGTGCGACCGTCCTCG 5110775 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || ||||||||||| |||| ||| | || ||| |||||| | Sbjct 5110776 AGCTGCTTACCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 5110835 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | ||||| |||||||| || | ||||| | || Sbjct 5110836 ATCTTGGACTTGA-CGTTGTCAATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTT 5110894 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 5110895 GCCAGTCAGAGTCTTGACGAAGATCTGCAT 5110924 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || ||||| || |||| || || || | || || Sbjct 5110430 CACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCATCCTC 5110489 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||| || ||||| || || || |||||||||||||||| || | | ||| |||||| Sbjct 5110490 AAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 5110549 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| |||| ||| | | | |||||| ||||| || || | ||||| | | Sbjct 5110550 GATCTTCGACTTGA-CGTTGTCGATGGTATCGGAAGACTCGACCTCGAGAGTGATGGTCT 5110608 Query 39254 TTCCCGTCAGCGTTTTAAC 39272 |||| ||||| || || || Sbjct 5110609 TTCCGGTCAGGGTCTTGAC 5110627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545552884217