Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq21 156 9e-33
>seq21
Length=3333843
Score = 156 bits (172), Expect = 9e-33
Identities = 567/870 (65%), Gaps = 27/870 (3%)
Strand=Plus/Minus
Query 229783 TGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAGTT--CCTCTGA 229840
||| | |||||||||||||| | ||| ||||||||||| | ||||| | |||||
Sbjct 2204185 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 2204126
Query 229841 ACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGAACGTCATTTCATCAAAC 229900
| | ||| | ||||||| || ||||| || ||||| || |||||| |
Sbjct 2204125 AAG--GACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCC 2204068
Query 229901 ACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCT-GCAGACCAA- 229958
|| |||| | || ||||||| ||||||||| ||||| | || || || | || | |
Sbjct 2204067 ACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGAT 2204008
Query 229959 -CTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCA 230017
|| ||| | ||||| | || |||||||| || || | || ||||| | |
Sbjct 2204007 TCTCTAGCG---AAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGA 2203951
Query 230018 ACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGC 230077
|| | || || || || ||||||| |||||| | ||| ||| | |
Sbjct 2203950 TGGAGAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGA-GCCC 2203892
Query 230078 AAGAACGGAACG-AGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCA 230136
||| | | | | | || || | ||||| || |||||||| | | || |||||
Sbjct 2203891 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 2203832
Query 230137 AAGTGGGCTCAGAAATGG--CTAGAACCTGGTAAATCG---TTTGCCGAGCGTCTCGTCG 230191
| ||||| | | |||| || || | || || || ||| | || ||||| |
Sbjct 2203831 GACTGGGCCCTGCGATGGATCTCCGACAAG--AACTCCACATTCGCCAACCGCCTCGTTG 2203774
Query 230192 CCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGC 230251
| | | |||||| ||||| | || ||| |||| | ||||||| |||||
Sbjct 2203773 CATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCA 2203714
Query 230252 GGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGG 230311
||| ||| ||||||| || || | || |||||| ||||| || |||||||
Sbjct 2203713 AGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGG 2203654
Query 230312 GTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTC 230370
| | || || | | |||| | ||| | | || ||| ||||||||| ||| |
Sbjct 2203653 GCATGCA-CACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGC--CCAGCC 2203597
Query 230371 GAGA--CGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTG 230428
||| | |||| | ||||| || ||||| || || | || |||||||| | | |
Sbjct 2203596 CAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCG 2203537
Query 230429 ACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487
|||| | ||||| ||| || | |||||||||||| || ||| | || ||||||||
Sbjct 2203536 ACGCACTACCATG-CGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAG 2203478
Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547
||||| || ||||| | | | || || || ||| || || ||| || | | |||
Sbjct 2203477 TTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCAAC 2203418
Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607
||||| | || |||||| |||||| || || ||||||||||||||||| |||||
Sbjct 2203417 CCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGC 2203358
Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
||| | ||||| |||| | | ||||| |||
Sbjct 2203357 GTCGGCGACTACCAGAAGGCCGGTGTCATG 2203328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823634059010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |