Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq1 84.2 2e-11
>seq1
Length=3968015
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/185 (72%), Gaps = 8/185 (4%)
Strand=Plus/Minus
Query 19041 TACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTT 19100
||||||||||| | |||||||| || || ||||| |||||||| || || || |||
Sbjct 260434 TACCAGAGATCCTGCGATATGGGTCTCGGTGTACCTTTCAACATCGCCTCCTACGCGCTT 260375
Query 19101 CTTACCTACATAGTAGCGCATGT-TACAGGACTTAAAACC--GGAGATTTAATTCATACA 19157
|| || |||| |||| ||||| | | ||| ||| || | | |||| | ||||||
Sbjct 260374 CTCACTCACATGCTAGCTCATGTGTGC--GACCTAACGCCCGGTACATTT-ACACATACA 260318
Query 19158 ATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCT--AGCTC 19215
||||| || ||||| | ||| | | || |||||||| | || |||||||| ||| |
Sbjct 260317 ATGGGCGACGCACACGTATACATCGACCACATAGATGCGCTGAAGGTGCAGCTGGAGCGC 260258
Query 19216 GATCC 19220
|| ||
Sbjct 260257 GAACC 260253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399503868538215
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |