Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 2e-11 >seq1 Length=3968015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 19041 TACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTT 19100 ||||||||||| | |||||||| || || ||||| |||||||| || || || ||| Sbjct 260434 TACCAGAGATCCTGCGATATGGGTCTCGGTGTACCTTTCAACATCGCCTCCTACGCGCTT 260375 Query 19101 CTTACCTACATAGTAGCGCATGT-TACAGGACTTAAAACC--GGAGATTTAATTCATACA 19157 || || |||| |||| ||||| | | ||| ||| || | | |||| | |||||| Sbjct 260374 CTCACTCACATGCTAGCTCATGTGTGC--GACCTAACGCCCGGTACATTT-ACACATACA 260318 Query 19158 ATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCT--AGCTC 19215 ||||| || ||||| | ||| | | || |||||||| | || |||||||| ||| | Sbjct 260317 ATGGGCGACGCACACGTATACATCGACCACATAGATGCGCTGAAGGTGCAGCTGGAGCGC 260258 Query 19216 GATCC 19220 || || Sbjct 260257 GAACC 260253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399503868538215