Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq21 149 7e-31
>seq21
Length=3333843
Score = 149 bits (164), Expect = 7e-31
Identities = 601/932 (64%), Gaps = 16/932 (2%)
Strand=Plus/Plus
Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009
||| || || || || | |||| | | | ||||| || || | ||| ||||||| |
Sbjct 607693 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 607752
Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069
||| | |||| || | || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 607753 CCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 607812
Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129
||||| | | | ||||| || || ||||| || || ||||| | |
Sbjct 607813 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAA 607872
Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189
| |||| ||||| || || | ||| |||| | | || || || ||||| || ||
Sbjct 607873 GACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACC 607932
Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249
||| || | || | ||| ||||| || || || | | ||| ||||| | ||| || ||
Sbjct 607933 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 607992
Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 54307
|| || || || || ||| || ||| | |||||||| | | ||| ||
Sbjct 607993 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 608050
Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367
|| || || || || | || ||||| || || || || | || || || |||||
Sbjct 608051 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 608110
Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAG 54425
|| ||||| || ||| |||||| | || || || ||||||| ||||| | |
Sbjct 608111 TCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATG--GTG 608168
Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 54484
| ||||| || || || || || || ||||| || || | |||| ||| | |||| | |
Sbjct 608169 TGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCG 608227
Query 54485 TACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 54543
|| |||||||| ||| || || || || | ||||| || || || |||||||| |
Sbjct 608228 TAGGTCTCGATGGCTTTCTCGATGTCATCACCG-TGAATGCCAACAGCAACACGCATGAG 608286
Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603
|||||| || || | || ||| |||| |||||| || | || || || |
Sbjct 608287 CATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAGCGCTCAAG 608346
Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663
|| || |||||||| | | ||| ||||| || ||||| | ||| | ||||||||
Sbjct 608347 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAG 608406
Query 54664 TTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGG-AGAATGTT 54722
| || | | || | | || | | | | ||| || || || | | ||
Sbjct 608407 CTCGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCTGAGATCATGGGTTGTCTCTT 608466
Query 54723 TCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGttttt 54782
| || || || || ||||||||||| | | ||| | | || | ||| | || |
Sbjct 608467 T-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCTTCT 608525
Query 54783 ttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGAT 54842
|||| | ||||| ||||||||||| || || | || || || || || ||||| ||||
Sbjct 608526 TTGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAATCGGGAT 608585
Query 54843 GTTGTGTAGTACAAGT-GGCTGCTATTTCGGC 54873
| |||| | || || |||||| | |||||
Sbjct 608586 G-TGTGGTGGTCATGTAGGCTGCGGTCTCGGC 608616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721399618960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |