Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq21 358 7e-94
seq23 127 2e-24
seq12 95.1 1e-14
seq26 86.0 6e-12
>seq21
Length=3333843
Score = 358 bits (396), Expect = 7e-94
Identities = 558/791 (71%), Gaps = 19/791 (2%)
Strand=Plus/Minus
Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698
|||| |||||||| ||||||||||| || |||||||||| |||||| | ||||| |||
Sbjct 2204185 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 2204126
Query 116699 AAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755
|||||| ||||||| | ||| | ||||| |||||||| |||||| |||
Sbjct 2204125 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 2204066
Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815
|| || ||||| ||||| ||| ||| ||||| ||||||||||| || || ||||| |||
Sbjct 2204065 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATTC 2204006
Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875
|| || || || | ||||||| || ||||||||||| || || ||| ||||||
Sbjct 2204005 TCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGAG 2203946
Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG--- 116932
||||| ||||| || | || || ||||||||||| ||| | || |||
Sbjct 2203945 AACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGC------GAGCCC 2203892
Query 116933 GAGAAGCTCCGTT---TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989
|| ||| | | | | || ||||||||||| | || || ||| || ||||||||
Sbjct 2203891 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 2203832
Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049
|| ||||| ||||| |||||| ||| || | || | |||| | | ||||| || ||
Sbjct 2203831 GACTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCA 2203772
Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109
||||| || || ||||| ||||||| || ||||||| |||| || |||||||||
Sbjct 2203771 TTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAG 2203712
Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169
|| ||||| || |||||||| || || ||| |||||||||||||||| | ||||||||
Sbjct 2203711 AAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGC 2203652
Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229
|||| |||||| ||||| | || ||| | | | | | || ||| | | |
Sbjct 2203651 ATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAG 2203592
Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289
||||| | ||| |||| || || |||| || |||||| ||| | | ||| ||
Sbjct 2203591 TCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCA 2203532
Query 117290 CTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCG 117347
|| || |||| |||||| || | || || | | |||| ||||||||||||||||
Sbjct 2203531 CTACC-ATGCGCTCTGCTCGGCATGAA-CGCTACTCTCATGTGCCAATACATCGAGTTCG 2203474
Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407
|||| ||| | |||||| | | || | | || |||| |||| || | |||||||
Sbjct 2203473 TCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCAACCCCT 2203414
Query 117408 TGGACTTTATG 117418
| ||||| |||
Sbjct 2203413 TCGACTTCATG 2203403
>seq23
Length=2828041
Score = 127 bits (140), Expect = 2e-24
Identities = 152/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || ||||| |||||||| |||| || ||| | | |
Sbjct 925495 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 925554
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || || | ||||| ||||| || || |||||||
Sbjct 925555 GACACTATTGACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCA 925613
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || ||||||| ||| || || ||| |||| |||| || || ||| |||||||||
Sbjct 925614 ACAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAA 925673
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
|||||| |||||| |||| || ||
Sbjct 925674 CATCCAAAAGGAGTCCACACTTCA 925697
Score = 122 bits (134), Expect = 9e-23
Identities = 151/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| ||||| |||||||| | || || || | |||||| | | | |||| |||||
Sbjct 925291 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACG-TCAAGTC 925349
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
||| || | ||||| ||||||||||| |||| |||||||| || |||| ||| || ||
Sbjct 925350 AAAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAA 925409
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| || || |||| |||||||| |||||||||||| ||||||||| |||| |||||
Sbjct 925410 GCAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCA 925469
Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || | ||| || | || ||
Sbjct 925470 CCTTGTCCTCCGCCTGCGCGGTGG 925493
Score = 107 bits (118), Expect = 2e-18
Identities = 136/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| || || ||||||||| |||| || || | | |||| | | | |||||
Sbjct 925008 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATGTCAAGA 925067
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| || | ||||| |||||||| ||| | |||||||| || | |||| ||| ||||
Sbjct 925068 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCA 925127
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| ||||| || || | |||||||| ||||||||||||||||||||| | || ||||
Sbjct 925128 AGCAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCTGC 925187
Query 40892 ATCTAGT 40898
|||| ||
Sbjct 925188 ATCTCGT 925194
Score = 96.9 bits (106), Expect = 4e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || || ||||| || | || ||||| | | |
Sbjct 925723 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 925782
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||| || || | ||||| ||||| ||||| | ||||||
Sbjct 925783 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 925842
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||| | ||| || || |||||||| |||| || || ||| |||||||||
Sbjct 925843 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 925902
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| | || || ||
Sbjct 925903 ATCCAGAAGGAGTCTACTCTCCA 925925
>seq12
Length=3815900
Score = 95.1 bits (104), Expect = 1e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| |||||||||| || || |||| ||| || || ||||| ||
Sbjct 2951518 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 2951459
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| | ||||| || ||||||||||||||||||||| |||| || ||
Sbjct 2951458 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCA 2951409
>seq26
Length=2547288
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| ||||||| || || || |||| ||| || || || || ||
Sbjct 1485524 GACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCCGGAAAGCAACTCGAG 1485465
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| | ||||| || |||||||||||||||||||||| | || || ||
Sbjct 1485464 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACCCTCCA 1485415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219026113520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |