Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq23 113 4e-20 seq12 109 5e-19 seq26 102 7e-17 >seq23 Length=2828041 Score = 113 bits (124), Expect = 4e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | ||| ||||| || ||||||||||| ||| || ||||| |||||||| || Sbjct 925470 GTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTG 925411 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| ||| |||| || || |||||||| ||||| ||||||||||||||| || || Sbjct 925410 CTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTT 925351 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 | || || | |||| |||||| | ||| ||||| | || | || |||||||| Sbjct 925350 TGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGT 925291 Query 118715 CA 118716 || Sbjct 925290 CA 925289 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| |||||||| || || |||||||| || | || || || || Sbjct 925932 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 925873 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| | |||||||||||||| || ||||| || ||||||||||| Sbjct 925872 CAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 925813 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | |||||| || | || | || || Sbjct 925812 GATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTT 925753 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||| |||||||| Sbjct 925752 TCCGGTAAGAGTCTTGACAAAGATCTGCAT 925723 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||| ||||| ||||| |||||||| ||| | ||| || || || Sbjct 925704 CACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTC 925645 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| ||||| ||| ||||||||||||| || || ||||| || |||||||||||| Sbjct 925644 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTG 925585 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | ||||| | || | || ||||||| || | || | Sbjct 925584 GATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGAT-TCCACCTCGAGCGTGATGGTCT 925526 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||| || || || || || ||||| Sbjct 925525 TGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || || |||||||| ||| || ||||| |||||| ||||| || || Sbjct 925182 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCG 925123 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| || || || |||||||||||||| || || || Sbjct 925122 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 925063 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| ||||| | ||| ||||||| ||| | || || ||||| Sbjct 925062 ACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 925010 >seq12 Length=3815900 Score = 109 bits (120), Expect = 5e-19 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| || | |||||| ||||||| Sbjct 2951403 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCG 2951462 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 ||||| ||||| ||| |||| ||||||||||| || || || |||||||||||||||| Sbjct 2951463 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTG 2951520 >seq26 Length=2547288 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| || |||||| ||||||| Sbjct 1485409 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCG 1485468 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || ||||| ||| |||| || ||||| || || || || |||||||||||||| Sbjct 1485469 AGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 1485524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830257242684