Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq21 107 4e-18
>seq21
Length=3333843
Score = 107 bits (118), Expect = 4e-18
Identities = 437/685 (64%), Gaps = 19/685 (3%)
Strand=Plus/Minus
Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877
||| | ||||||| |||||| || || ||| || ||||||||| || | ||||||
Sbjct 608370 TACCAGTTCTTTGGTTTCAAGACACTTGAGCGCTCATATCTCCTCCGCATAAACGGCAAG 608311
Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937
||| || || || |||||| | ||||| || ||||| || |||||| ||||||
Sbjct 608310 GTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGAC 608251
Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997
|| |||| | ||||||| ||| | ||| | || | | ||||| ||| |
Sbjct 608250 ATCGAGAAAGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCG 608191
Query 248998 CCGACGCTCTTCAACGCCGGTAC--CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055
|||||| | |||||||| || || | ||| | || || || ||||| || | |
Sbjct 608190 CCGACGTTGTTCAACGCGGGCACACCATCACCG--CAAATGTCGTCATGCTTCCTCATCG 608133
Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGA 249112
|||| | || ||| | ||||||||||||| ||||| || | |||| ||| ||
Sbjct 608132 ACATGAAGGAGGACAGTATCGACGGCATTTACGACACACTCA---AGACCTGTGCGTTGA 608076
Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172
| || || ||| ||||| || || ||| ||| | ||| || || | || || |
Sbjct 608075 TCTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCAT 608016
Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT 249232
||||| || || || || | | ||| || | ||| | || || | |
Sbjct 608015 ACATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACA 607956
Query 249233 CCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGT 249286
||| || | | || |||||| || ||| | | || | |||||||| |
Sbjct 607955 ACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCA---GGTGCCTTCGCCATCT 607899
Query 249287 ATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCA 249346
| | || |||||||| || | || | ||||| ||| || |||||| ||||||
Sbjct 607898 ACCTAGAGCCATGGCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCA 607839
Query 249347 ACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGC 249406
| ||| | | || || || |||||||||| |||||| | | ||| | ||||||
Sbjct 607838 AGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGA 607779
Query 249407 GCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCA 249466
|| ||| | | | ||||| | ||||| || | | ||| ||| ||| | ||||
Sbjct 607778 AGCGTGTCCAAGACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCG 607719
Query 249467 TCGATCTACACGGCGCCGACTTCGA 249491
|||| | |||| | || |||||
Sbjct 607718 CCGATGTCTACGGTGAAGAATTCGA 607694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073766028543936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |