Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq21 107 4e-18 >seq21 Length=3333843 Score = 107 bits (118), Expect = 4e-18 Identities = 437/685 (64%), Gaps = 19/685 (3%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||||| |||||| || || ||| || ||||||||| || | |||||| Sbjct 608370 TACCAGTTCTTTGGTTTCAAGACACTTGAGCGCTCATATCTCCTCCGCATAAACGGCAAG 608311 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| || || || |||||| | ||||| || ||||| || |||||| |||||| Sbjct 608310 GTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGAC 608251 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || |||| | ||||||| ||| | ||| | || | | ||||| ||| | Sbjct 608250 ATCGAGAAAGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCG 608191 Query 248998 CCGACGCTCTTCAACGCCGGTAC--CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 |||||| | |||||||| || || | ||| | || || || ||||| || | | Sbjct 608190 CCGACGTTGTTCAACGCGGGCACACCATCACCG--CAAATGTCGTCATGCTTCCTCATCG 608133 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGA 249112 |||| | || ||| | ||||||||||||| ||||| || | |||| ||| || Sbjct 608132 ACATGAAGGAGGACAGTATCGACGGCATTTACGACACACTCA---AGACCTGTGCGTTGA 608076 Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172 | || || ||| ||||| || || ||| ||| | ||| || || | || || | Sbjct 608075 TCTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCAT 608016 Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT 249232 ||||| || || || || | | ||| || | ||| | || || | | Sbjct 608015 ACATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACA 607956 Query 249233 CCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGT 249286 ||| || | | || |||||| || ||| | | || | |||||||| | Sbjct 607955 ACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCA---GGTGCCTTCGCCATCT 607899 Query 249287 ATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCA 249346 | | || |||||||| || | || | ||||| ||| || |||||| |||||| Sbjct 607898 ACCTAGAGCCATGGCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCA 607839 Query 249347 ACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGC 249406 | ||| | | || || || |||||||||| |||||| | | ||| | |||||| Sbjct 607838 AGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGA 607779 Query 249407 GCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCA 249466 || ||| | | | ||||| | ||||| || | | ||| ||| ||| | |||| Sbjct 607778 AGCGTGTCCAAGACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCG 607719 Query 249467 TCGATCTACACGGCGCCGACTTCGA 249491 |||| | |||| | || ||||| Sbjct 607718 CCGATGTCTACGGTGAAGAATTCGA 607694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766028543936