Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq21 309 3e-79
seq23 111 1e-19
>seq21
Length=3333843
Score = 309 bits (342), Expect = 3e-79
Identities = 649/956 (68%), Gaps = 15/956 (2%)
Strand=Plus/Plus
Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087
|| |||| ||||| || || ||||| || | |||||||| ||||| || || || |
Sbjct 607456 AGCCAAG-TTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACA 607514
Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147
| ||| | || || || | || |||||||||| || || ||||| | ||||
Sbjct 607515 GGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCT 607574
Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAG 23207
|||||||||| | || | || |||||| ||| | ||| | ||| || ||| |
Sbjct 607575 TGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCT 607634
Query 23208 TCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCT--CGTACTTTTGGTACAACGC 23265
| || ||| ||||| ||| | || ||| |||| | | |||| | | ||||| ||
Sbjct 607635 TTTGTGCGCGAACA-GTCTCGCGACCCTTG-TTCTGCTTTTCGTAGCTCTCGTACAGAGC 607692
Query 23266 GTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324
|| ||||| ||||||| ||| ||||| ||||| || | | |||| ||||| ||
Sbjct 607693 TTCGAATTCTTCACCGTAGACA-TCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTG 607751
Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384
|||| | || | || || || |||| || || || || ||||| ||||||||||
Sbjct 607752 TCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGA 607811
Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444
| || ||||| ||||| |||||||| |||||| |||||| || || | || | |
Sbjct 607812 AGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAA 607871
Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504
| ||||| || ||||| ||||| ||||| | ||| || || || || | ||| ||||| |
Sbjct 607872 AGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCAC 607931
Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564
|||| ||||| || || || ||||||||||| || | ||||| || | ||||||||| |
Sbjct 607932 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAG 607991
Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624
| | ||| ||| | | || || | || |||| | ||| |||| || |
Sbjct 607992 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGC 608051
Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684
| || || || | | || || |||| ||| || || || |||||||| ||||| |
Sbjct 608052 CAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGT 608111
Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744
|||| |||||||| || | ||| | ||| || || |||||||||| | || ||
Sbjct 608112 CGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGC 608171
Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTAC 23803
| || ||||| ||||| |||||| || ||||| | ||||| ||| | |||
Sbjct 608172 CCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCGTAG 608230
Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863
|| |||||||| || ||||| || ||||| || || | || || ||||| | ||||
Sbjct 608231 GTCTCGATGGCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATG 608290
Query 23864 TATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920
| ||| || | || ||||| | |||||| || || |||||||| || | |
Sbjct 608291 TGTTGTGGGCGCTCGGCGACCTT---GCCGTTTATGCGGAGGAGATATGAGCGCTCAAGT 608347
Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
|| || || ||||| | | ||||| |||||||| |||| || || ||||| ||
Sbjct 608348 GTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 608403
Score = 167 bits (184), Expect = 2e-36
Identities = 474/724 (65%), Gaps = 11/724 (2%)
Strand=Plus/Minus
Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632
||| | |||||||| ||||| || || || || ||||||| || || | ||||| ||
Sbjct 2204185 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 2204126
Query 57633 AAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689
||||| || ||| ||| | | |||| || ||| | || || |||
Sbjct 2204125 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 2204066
Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749
|| | || || ||||| || |||||||| ||||| |||||||| | || || ||||
Sbjct 2204065 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATTC 2204006
Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809
|| ||||| ||| | | ||||| ||||||| ||||| || ||| | || ||
Sbjct 2204005 TCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGAG 2203946
Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869
||||| || ||||| | || || || |||||||| || ||| | | || | | ||
Sbjct 2203945 AACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCAG 2203886
Query 57870 AA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTG 57928
| ||| || |||||||| ||||| | || ||| ||| ||||||||| || ||
Sbjct 2203885 CGCAGGTAC-CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGACTG 2203827
Query 57929 GTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTT 57985
| | | |||||| || || | |||| |||||| | | || | || ||
Sbjct 2203826 GGCCCTGCGATGGATCTC---CGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATT 2203770
Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045
|||||| || || ||||| ||||| || || || | || || ||| | |||||
Sbjct 2203769 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 2203710
Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105
||||| ||||||||||| || || || ||||||| | || || || |||||||| |
Sbjct 2203709 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 2203650
Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCG 58165
|| || || || || ||||| | | ||||| | | | || || || | | ||
Sbjct 2203649 GCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGTC 2203590
Query 58166 CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225
|| | || ||||| || || |||| ||| || | ||||| | | ||| || ||
Sbjct 2203589 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 2203530
Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285
||| || ||||||| |||||| | | | |||| | ||||| ||||| || ||
Sbjct 2203529 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 2203470
Query 58286 CGAC 58289
|||
Sbjct 2203469 TGAC 2203466
>seq23
Length=2828041
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| ||||| ||||| || ||||| |||| || ||| | |
Sbjct 925495 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 925554
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | ||||| || || |||||||| || | || || |||||
Sbjct 925555 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 925614
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| || || |||||||||||| ||| | ||| || |||
Sbjct 925615 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 925674
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| || || || ||||| |||| ||| | || | || ||||
Sbjct 925675 ATCCAAAAGGAGTCCACACTTCACTTGGTGCTTCGTCTCCGTGGTGGTA 925723
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766249553840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |