Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq21 309 3e-79 seq23 111 1e-19 >seq21 Length=3333843 Score = 309 bits (342), Expect = 3e-79 Identities = 649/956 (68%), Gaps = 15/956 (2%) Strand=Plus/Plus Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087 || |||| ||||| || || ||||| || | |||||||| ||||| || || || | Sbjct 607456 AGCCAAG-TTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACA 607514 Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147 | ||| | || || || | || |||||||||| || || ||||| | |||| Sbjct 607515 GGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCT 607574 Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAG 23207 |||||||||| | || | || |||||| ||| | ||| | ||| || ||| | Sbjct 607575 TGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCT 607634 Query 23208 TCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCT--CGTACTTTTGGTACAACGC 23265 | || ||| ||||| ||| | || ||| |||| | | |||| | | ||||| || Sbjct 607635 TTTGTGCGCGAACA-GTCTCGCGACCCTTG-TTCTGCTTTTCGTAGCTCTCGTACAGAGC 607692 Query 23266 GTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 || ||||| ||||||| ||| ||||| ||||| || | | |||| ||||| || Sbjct 607693 TTCGAATTCTTCACCGTAGACA-TCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTG 607751 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 |||| | || | || || || |||| || || || || ||||| |||||||||| Sbjct 607752 TCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGA 607811 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 | || ||||| ||||| |||||||| |||||| |||||| || || | || | | Sbjct 607812 AGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAA 607871 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | ||||| || ||||| ||||| ||||| | ||| || || || || | ||| ||||| | Sbjct 607872 AGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCAC 607931 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 |||| ||||| || || || ||||||||||| || | ||||| || | ||||||||| | Sbjct 607932 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAG 607991 Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624 | | ||| ||| | | || || | || |||| | ||| |||| || | Sbjct 607992 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGC 608051 Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 | || || || | | || || |||| ||| || || || |||||||| ||||| | Sbjct 608052 CAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGT 608111 Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744 |||| |||||||| || | ||| | ||| || || |||||||||| | || || Sbjct 608112 CGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGC 608171 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTAC 23803 | || ||||| ||||| |||||| || ||||| | ||||| ||| | ||| Sbjct 608172 CCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCGTAG 608230 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || |||||||| || ||||| || ||||| || || | || || ||||| | |||| Sbjct 608231 GTCTCGATGGCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATG 608290 Query 23864 TATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920 | ||| || | || ||||| | |||||| || || |||||||| || | | Sbjct 608291 TGTTGTGGGCGCTCGGCGACCTT---GCCGTTTATGCGGAGGAGATATGAGCGCTCAAGT 608347 Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || || || ||||| | | ||||| |||||||| |||| || || ||||| || Sbjct 608348 GTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 608403 Score = 167 bits (184), Expect = 2e-36 Identities = 474/724 (65%), Gaps = 11/724 (2%) Strand=Plus/Minus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | |||||||| ||||| || || || || ||||||| || || | ||||| || Sbjct 2204185 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 2204126 Query 57633 AAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689 ||||| || ||| ||| | | |||| || ||| | || || ||| Sbjct 2204125 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 2204066 Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 || | || || ||||| || |||||||| ||||| |||||||| | || || |||| Sbjct 2204065 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATTC 2204006 Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809 || ||||| ||| | | ||||| ||||||| ||||| || ||| | || || Sbjct 2204005 TCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGAG 2203946 Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869 ||||| || ||||| | || || || |||||||| || ||| | | || | | || Sbjct 2203945 AACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCAG 2203886 Query 57870 AA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTG 57928 | ||| || |||||||| ||||| | || ||| ||| ||||||||| || || Sbjct 2203885 CGCAGGTAC-CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGACTG 2203827 Query 57929 GTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTT 57985 | | | |||||| || || | |||| |||||| | | || | || || Sbjct 2203826 GGCCCTGCGATGGATCTC---CGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATT 2203770 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045 |||||| || || ||||| ||||| || || || | || || ||| | ||||| Sbjct 2203769 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 2203710 Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105 ||||| ||||||||||| || || || ||||||| | || || || |||||||| | Sbjct 2203709 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 2203650 Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCG 58165 || || || || || ||||| | | ||||| | | | || || || | | || Sbjct 2203649 GCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGTC 2203590 Query 58166 CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225 || | || ||||| || || |||| ||| || | ||||| | | ||| || || Sbjct 2203589 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 2203530 Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285 ||| || ||||||| |||||| | | | |||| | ||||| ||||| || || Sbjct 2203529 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 2203470 Query 58286 CGAC 58289 ||| Sbjct 2203469 TGAC 2203466 >seq23 Length=2828041 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| || ||||| |||| || ||| | | Sbjct 925495 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 925554 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| || || |||||||| || | || || ||||| Sbjct 925555 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 925614 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || |||||||||||| ||| | ||| || ||| Sbjct 925615 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 925674 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || ||||| |||| ||| | || | || |||| Sbjct 925675 ATCCAAAAGGAGTCCACACTTCACTTGGTGCTTCGTCTCCGTGGTGGTA 925723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766249553840