Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq21 154 2e-32
>seq21
Length=3333843
Score = 154 bits (170), Expect = 2e-32
Identities = 608/939 (65%), Gaps = 22/939 (2%)
Strand=Plus/Plus
Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247
|||||| || || || | |||| | | | | ||| || || | ||| ||||||| |
Sbjct 607693 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 607752
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307
||| | |||| || | || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 607753 CCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 607812
Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367
||||| | | | ||||| || || ||||| || || ||||| | |
Sbjct 607813 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAA 607872
Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427
| |||| ||||| || || | ||| ||||| | | || || || ||||| || ||
Sbjct 607873 GACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACC 607932
Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487
||| || | || | ||| ||||| || || || | | ||| ||||| | |||||| ||
Sbjct 607933 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 607992
Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGA 63545
| | || || || || ||| || ||| | |||||||| | | ||| ||
Sbjct 607993 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 608050
Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605
|| || || || || | || ||||| || || || || | ||||| || |||||
Sbjct 608051 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 608110
Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGAGTAG 63663
|| || || || || |||||| | || || || ||||||| ||||| | || |
Sbjct 608111 TCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATG-GT-G 608168
Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63722
| ||||| || || || || || || ||||| || || | |||| ||| | |||| | |
Sbjct 608169 TGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCG 608227
Query 63723 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63781
|| ||||| || ||| || || || || | ||||| || || || |||||||| |
Sbjct 608228 TAGGTCTCGATGGCTTTCTCGATGTCATCACCG-TGAATGCCAACAGCAACACGCATGAG 608286
Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841
|||||| || || | || | | ||| |||||| | | || || || |
Sbjct 608287 CATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAGCGCTCAAG 608346
Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901
|| || |||||||| | | ||| ||||| || ||||| | ||| |||| |||||
Sbjct 608347 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAG 608406
Query 63902 CTTATCCTTATATTTGTTAACTATATCCATGGTAAT---ACTTGAAATAATCGG-AGAAT 63957
|| || | | | | | ||| || || || | ||| || || || | |
Sbjct 608407 CTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCTGAGATCATGGGTTGTCT 608463
Query 63958 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 64017
||| || || || || || ||||||||| | | ||| || | || | ||| | |
Sbjct 608464 CTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCT 608522
Query 64018 tttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64077
| ||||| | |||||| |||||||||| || || | || || || || || ||||| |
Sbjct 608523 TCTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAATCGG 608582
Query 64078 GATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64115
|||| |||| | || || |||||| | ||||| |||
Sbjct 608583 GATG-TGTGGTGGTCATGTAGGCTGCGGTCTCGGCGGCC 608620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817387436560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |