Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq21 154 2e-32 >seq21 Length=3333843 Score = 154 bits (170), Expect = 2e-32 Identities = 608/939 (65%), Gaps = 22/939 (2%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 |||||| || || || | |||| | | | | ||| || || | ||| ||||||| | Sbjct 607693 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 607752 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| | |||| || | || || ||||| ||||| ||||||||||| ||||| || Sbjct 607753 CCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 607812 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 ||||| | | | ||||| || || ||||| || || ||||| | | Sbjct 607813 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAA 607872 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | |||| ||||| || || | ||| ||||| | | || || || ||||| || || Sbjct 607873 GACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACC 607932 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||| || | || | ||| ||||| || || || | | ||| ||||| | |||||| || Sbjct 607933 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 607992 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGA 63545 | | || || || || ||| || ||| | |||||||| | | ||| || Sbjct 607993 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 608050 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || || || || | || ||||| || || || || | ||||| || ||||| Sbjct 608051 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 608110 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGAGTAG 63663 || || || || || |||||| | || || || ||||||| ||||| | || | Sbjct 608111 TCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATG-GT-G 608168 Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63722 | ||||| || || || || || || ||||| || || | |||| ||| | |||| | | Sbjct 608169 TGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCG 608227 Query 63723 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || ||||| || ||| || || || || | ||||| || || || |||||||| | Sbjct 608228 TAGGTCTCGATGGCTTTCTCGATGTCATCACCG-TGAATGCCAACAGCAACACGCATGAG 608286 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| || || | || | | ||| |||||| | | || || || | Sbjct 608287 CATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAGCGCTCAAG 608346 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 || || |||||||| | | ||| ||||| || ||||| | ||| |||| ||||| Sbjct 608347 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAG 608406 Query 63902 CTTATCCTTATATTTGTTAACTATATCCATGGTAAT---ACTTGAAATAATCGG-AGAAT 63957 || || | | | | | ||| || || || | ||| || || || | | Sbjct 608407 CTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCTGAGATCATGGGTTGTCT 608463 Query 63958 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 64017 ||| || || || || || ||||||||| | | ||| || | || | ||| | | Sbjct 608464 CTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCT 608522 Query 64018 tttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64077 | ||||| | |||||| |||||||||| || || | || || || || || ||||| | Sbjct 608523 TCTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAATCGG 608582 Query 64078 GATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64115 |||| |||| | || || |||||| | ||||| ||| Sbjct 608583 GATG-TGTGGTGGTCATGTAGGCTGCGGTCTCGGCGGCC 608620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817387436560