Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq21 165 1e-35
>seq21
Length=3333843
Score = 165 bits (182), Expect = 1e-35
Identities = 607/936 (65%), Gaps = 16/936 (2%)
Strand=Plus/Plus
Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919
|||||| || || || | |||||| | | ||||| || |||| || ||||||| |
Sbjct 607693 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 607752
Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979
||| | || | || | || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 607753 CCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 607812
Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039
||||| | | | |||||| || || ||||| || || ||||| | |
Sbjct 607813 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAA 607872
Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099
| |||| ||||| || || | ||| ||||| | | || || || ||||| || ||
Sbjct 607873 GACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACC 607932
Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159
||| || | || | ||| ||||| || || || | | ||| ||||| | ||| || ||
Sbjct 607933 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 607992
Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 80217
||| || || || || ||| || ||| | |||||||| | | ||| ||
Sbjct 607993 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 608050
Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277
|| || || || || | || ||||| || || || || | || || || |||||
Sbjct 608051 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 608110
Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAG 80335
|| || || || || |||||| | || || || ||||||| ||||| | |
Sbjct 608111 TCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATG--GTG 608168
Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTG 80394
| ||||| || || || || || || ||||| || || | |||| ||||| |||| | |
Sbjct 608169 TGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCG 608227
Query 80395 TACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAA 80453
|| ||||| || ||| || || || || | ||||| || || || |||||||| |
Sbjct 608228 TAGGTCTCGATGGCTTTCTCGATGTCATCACCG-TGAATGCCAACAGCAACACGCATGAG 608286
Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513
|||||| || || | || ||| |||| ||||| | | || || || |
Sbjct 608287 CATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAGCGCTCAAG 608346
Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573
|| || |||||||| | | ||| ||||| || ||||| | ||| ||||||||||
Sbjct 608347 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAG 608406
Query 80574 TTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGG-AGAATGTT 80632
| || | | || | | || | | || | ||| || || || | | ||
Sbjct 608407 CTCGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCTGAGATCATGGGTTGTCTCTT 608466
Query 80633 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 80692
| || || || || || ||||||||| | | ||| || | || | ||| | || |
Sbjct 608467 T-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCTTCT 608525
Query 80693 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGAT 80752
|||| | |||||| ||||||||||| || || | || || | || || ||||| ||||
Sbjct 608526 TTGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAATCGGGAT 608585
Query 80753 GTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 80787
| |||| | || || |||||| | ||||| |||
Sbjct 608586 G-TGTGGTGGTCATGTAGGCTGCGGTCTCGGCGGCC 608620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268557584280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |