Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq21 170 3e-37 >seq21 Length=3333843 Score = 170 bits (188), Expect = 3e-37 Identities = 745/1159 (64%), Gaps = 30/1159 (3%) Strand=Plus/Plus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 || ||||| ||| |||| || ||||| || ||||||| || | ||| || | | ||| Sbjct 607444 CAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAAT 607503 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 |||||||| || || | |||||| || | || | || || ||||| ||| Sbjct 607504 CTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTT 607563 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || || ||||| || || ||||| || ||||||| || |||| | || | || || Sbjct 607564 GCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGC 607623 Query 71874 TTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT-TTCTC--TTTCGTAT-T 71929 | ||| | | | || | | ||| | | ||| |||| ||||||| | Sbjct 607624 GTACCAAAGCTTTTGTGCGCGAAC---AGTCTCGCGACCCTTGTTCTGCTTTTCGTAGCT 607680 Query 71930 GT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTC 71988 | ||| | | |||||| || || || | ||| | | | ||||| || || ||| Sbjct 607681 CTCGTACAGAGC--TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTC 607738 Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 || ||||||| || ||| | || | || | || || ||||| ||||| ||||||||| Sbjct 607739 GGGCACATCAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATC 607798 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 || ||||| || ||||| | | | |||||| || || ||||| || Sbjct 607799 CACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGG 607858 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 || ||||| | | | |||| ||||| || || | ||| ||||| | | || || Sbjct 607859 TCAAGGAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGA 607918 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 || ||||| || ||||| || | || | ||| ||||| || || || | | ||| ||| Sbjct 607919 CGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGA 607978 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--AT 72286 || | ||| || |||| || || || || ||| || ||| | |||||||| Sbjct 607979 ATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGG 608038 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 ||| ||| || || || || || || | || ||||| || || || || | | Sbjct 608039 TGCACGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTG 608096 Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406 | || || ||||| || ||||| || ||| |||||| | || || || ||||||| Sbjct 608097 TGTCGTAAATGCCGTCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTT 608156 Query 72407 --GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464 ||||| | || ||||| || || || || || || ||||| || || | |||| Sbjct 608157 GCGGTGATG--GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTG 608214 Query 72465 AGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACC 72522 ||||| |||| | ||| ||||| || ||| || || || || | || || || || Sbjct 608215 AGACATGTAG-TCGTAGGTCTCGATGGCTTTCTCGATGTCATCACCG-TGAATGCCAACA 608272 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582 || |||||||| | ||| || || || | || ||| |||| ||||| | | Sbjct 608273 GCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGA 608332 Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642 || || || | || || |||||||| | | ||| ||||| || ||||| | Sbjct 608333 TATGAGCGCTCAAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACG 608392 Query 72643 ATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGAT---ACTTGAA 72699 ||| |||| ||||| | || | | | | | ||| || || ||| | ||| Sbjct 608393 ATAGCCGAGTTGAGCTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCTGAG 608449 Query 72700 ATAATCGG-AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCAC 72758 || || || | | ||| || || || || || ||||||||| | | ||| || | || Sbjct 608450 ATCATGGGTTGTCTCTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAAC 608508 Query 72759 TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAG 72818 | ||| | || ||||| | |||||| ||||||||||| || || | || || || Sbjct 608509 GAGAGAGAATTGCTTCTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAG 608568 Query 72819 AATGGCATAATCTGGATGT 72837 || || ||||| |||||| Sbjct 608569 GATTGCGTAATCGGGATGT 608587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138973490520