Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq21 170 3e-37
>seq21
Length=3333843
Score = 170 bits (188), Expect = 3e-37
Identities = 745/1159 (64%), Gaps = 30/1159 (3%)
Strand=Plus/Plus
Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753
|| ||||| ||| |||| || ||||| || ||||||| || | ||| || | | |||
Sbjct 607444 CAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAAT 607503
Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813
|||||||| || || | |||||| || | || | || || ||||| |||
Sbjct 607504 CTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTT 607563
Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873
|| || ||||| || || ||||| || ||||||| || |||| | || | || ||
Sbjct 607564 GCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGC 607623
Query 71874 TTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT-TTCTC--TTTCGTAT-T 71929
| ||| | | | || | | ||| | | ||| |||| ||||||| |
Sbjct 607624 GTACCAAAGCTTTTGTGCGCGAAC---AGTCTCGCGACCCTTGTTCTGCTTTTCGTAGCT 607680
Query 71930 GT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTC 71988
| ||| | | |||||| || || || | ||| | | | ||||| || || |||
Sbjct 607681 CTCGTACAGAGC--TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTC 607738
Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048
|| ||||||| || ||| | || | || | || || ||||| ||||| |||||||||
Sbjct 607739 GGGCACATCAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATC 607798
Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108
|| ||||| || ||||| | | | |||||| || || ||||| ||
Sbjct 607799 CACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGG 607858
Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168
|| ||||| | | | |||| ||||| || || | ||| ||||| | | || ||
Sbjct 607859 TCAAGGAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGA 607918
Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228
|| ||||| || ||||| || | || | ||| ||||| || || || | | ||| |||
Sbjct 607919 CGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGA 607978
Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--AT 72286
|| | ||| || |||| || || || || ||| || ||| | ||||||||
Sbjct 607979 ATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGG 608038
Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346
||| ||| || || || || || || | || ||||| || || || || | |
Sbjct 608039 TGCACGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTG 608096
Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406
| || || ||||| || ||||| || ||| |||||| | || || || |||||||
Sbjct 608097 TGTCGTAAATGCCGTCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTT 608156
Query 72407 --GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464
||||| | || ||||| || || || || || || ||||| || || | ||||
Sbjct 608157 GCGGTGATG--GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTG 608214
Query 72465 AGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACC 72522
||||| |||| | ||| ||||| || ||| || || || || | || || || ||
Sbjct 608215 AGACATGTAG-TCGTAGGTCTCGATGGCTTTCTCGATGTCATCACCG-TGAATGCCAACA 608272
Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582
|| |||||||| | ||| || || || | || ||| |||| ||||| | |
Sbjct 608273 GCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGA 608332
Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642
|| || || | || || |||||||| | | ||| ||||| || ||||| |
Sbjct 608333 TATGAGCGCTCAAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACG 608392
Query 72643 ATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGAT---ACTTGAA 72699
||| |||| ||||| | || | | | | | ||| || || ||| | |||
Sbjct 608393 ATAGCCGAGTTGAGCTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCTGAG 608449
Query 72700 ATAATCGG-AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCAC 72758
|| || || | | ||| || || || || || ||||||||| | | ||| || | ||
Sbjct 608450 ATCATGGGTTGTCTCTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAAC 608508
Query 72759 TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAG 72818
| ||| | || ||||| | |||||| ||||||||||| || || | || || ||
Sbjct 608509 GAGAGAGAATTGCTTCTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAG 608568
Query 72819 AATGGCATAATCTGGATGT 72837
|| || ||||| ||||||
Sbjct 608569 GATTGCGTAATCGGGATGT 608587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138973490520
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