Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq21 289 4e-73
>seq21
Length=3333843
Score = 289 bits (320), Expect = 4e-73
Identities = 582/856 (68%), Gaps = 23/856 (3%)
Strand=Plus/Minus
Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081
||| | |||||||| ||||| |||| || || ||||| | || ||| |||| || |||
Sbjct 2204185 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 2204126
Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141
|||||||| |||| ||| | | ||| | | || ||||| || || || |||
Sbjct 2204125 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 2204066
Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200
| | |||||||| || | ||||||||| || |||||||| || || ||||| |||||
Sbjct 2204065 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAG-CGATT 2204007
Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260
|||| || | || || |||| ||||| ||||| |||||||||||||| ||
Sbjct 2204006 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 2203947
Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317
|||||| ||||| || | |||||| || || |||| |||||| |||| || |||
Sbjct 2203946 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCA 2203887
Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377
|| | || ||||| ||||| ||||||| | || | || || || ||||| |
Sbjct 2203886 GCGCAGGTAC---CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGA 2203830
Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437
|||| | || |||||| ||| | || || | | |||| || | || || |||||
Sbjct 2203829 CTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATT 2203770
Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497
|||||| || ||||| |||||||| ||| ||| || ||||||| |||||||||||
Sbjct 2203769 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 2203710
Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557
|||||| || |||||||| || || | |||||| | || || || ||||||||| |
Sbjct 2203709 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 2203650
Query 125558 ACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAG 125617
||| ||||| ||| || || || || ||| | |||| || ||||
Sbjct 2203649 GCACACCGACTTCGCCTGCCTTCTCTT------CTCTCT---CCTCGAGAACAAGCCCAG 2203599
Query 125618 CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAAC 125677
| || |||| || | || || ||||| ||| || || ||||| | |
Sbjct 2203598 CCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAG 2203539
Query 125678 CGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGA 125737
||| | ||||| | || | ||||||||| | || |||||| | ||||| ||
Sbjct 2203538 CGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGA 2203479
Query 125738 GTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAA 125794
||| || || || ||||| |||| | | ||| || |||| | ||| ||||||
Sbjct 2203478 GTTCGTCGCTGACCGTCTGCTGT---TGGCCCTCGGCAACGTCAAGGTCTACCACGCCAC 2203422
Query 125795 GAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854
|| ||||| || |||||| | ||| || || | |||||||||||||| ||||||||
Sbjct 2203421 CAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAA 2203362
Query 125855 GAAGGTCAGCGAGTAC 125870
| ||| |||| |||
Sbjct 2203361 GCGCGTCGGCGACTAC 2203346
Score = 150 bits (166), Expect = 3e-31
Identities = 318/472 (67%), Gaps = 2/472 (0%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || ||||| || | ||| ||||| | || || |||||||| |||
Sbjct 607935 CAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCTAGAGCCATGGCACGCTGAC 607876
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| |||| || | || ||||||| ||| ||| || |||| || || | ||
Sbjct 607875 GTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGAT 607816
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || || || ||| | || || | ||||||||||| ||| | ||| ||| ||
Sbjct 607815 CTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAAGACAACGGCAAC 607756
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || |||||||| || || || || || ||||| || || ||||| ||
Sbjct 607755 TGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTC 607696
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174
|| || |||| | |||||| | || | | || ||||| ||| ||||
Sbjct 607695 GAAGCTCTGTACGAGAGCTACGAAAAGCAGAACAAGGGTCGCGAGACTGTTCG-CGCACA 607637
Query 97175 AGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234
| | || ||| | |||||| | ||| ||| |||||||| | || | || |||||
Sbjct 607636 AAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTTTATGCTCTA 607577
Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294
|||||| | || ||||| |||||||| || | || |||||| |||||||
Sbjct 607576 CAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTCCAA 607517
Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
|||||||| || ||||| |||||| || |||| || ||| || ||||||
Sbjct 607516 CCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTGC 607465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058949892520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |