Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq21 289 4e-73 >seq21 Length=3333843 Score = 289 bits (320), Expect = 4e-73 Identities = 582/856 (68%), Gaps = 23/856 (3%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| | |||||||| ||||| |||| || || ||||| | || ||| |||| || ||| Sbjct 2204185 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 2204126 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 |||||||| |||| ||| | | ||| | | || ||||| || || || ||| Sbjct 2204125 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 2204066 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 | | |||||||| || | ||||||||| || |||||||| || || ||||| ||||| Sbjct 2204065 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAG-CGATT 2204007 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 |||| || | || || |||| ||||| ||||| |||||||||||||| || Sbjct 2204006 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 2203947 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317 |||||| ||||| || | |||||| || || |||| |||||| |||| || ||| Sbjct 2203946 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCA 2203887 Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377 || | || ||||| ||||| ||||||| | || | || || || ||||| | Sbjct 2203886 GCGCAGGTAC---CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGA 2203830 Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 |||| | || |||||| ||| | || || | | |||| || | || || ||||| Sbjct 2203829 CTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATT 2203770 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497 |||||| || ||||| |||||||| ||| ||| || ||||||| ||||||||||| Sbjct 2203769 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 2203710 Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557 |||||| || |||||||| || || | |||||| | || || || ||||||||| | Sbjct 2203709 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 2203650 Query 125558 ACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAG 125617 ||| ||||| ||| || || || || ||| | |||| || |||| Sbjct 2203649 GCACACCGACTTCGCCTGCCTTCTCTT------CTCTCT---CCTCGAGAACAAGCCCAG 2203599 Query 125618 CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAAC 125677 | || |||| || | || || ||||| ||| || || ||||| | | Sbjct 2203598 CCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAG 2203539 Query 125678 CGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGA 125737 ||| | ||||| | || | ||||||||| | || |||||| | ||||| || Sbjct 2203538 CGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGA 2203479 Query 125738 GTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAA 125794 ||| || || || ||||| |||| | | ||| || |||| | ||| |||||| Sbjct 2203478 GTTCGTCGCTGACCGTCTGCTGT---TGGCCCTCGGCAACGTCAAGGTCTACCACGCCAC 2203422 Query 125795 GAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 || ||||| || |||||| | ||| || || | |||||||||||||| |||||||| Sbjct 2203421 CAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAA 2203362 Query 125855 GAAGGTCAGCGAGTAC 125870 | ||| |||| ||| Sbjct 2203361 GCGCGTCGGCGACTAC 2203346 Score = 150 bits (166), Expect = 3e-31 Identities = 318/472 (67%), Gaps = 2/472 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || ||||| || | ||| ||||| | || || |||||||| ||| Sbjct 607935 CAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCTAGAGCCATGGCACGCTGAC 607876 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || |||| || | || ||||||| ||| ||| || |||| || || | || Sbjct 607875 GTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGAT 607816 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || || ||| | || || | ||||||||||| ||| | ||| ||| || Sbjct 607815 CTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAAGACAACGGCAAC 607756 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || |||||||| || || || || || ||||| || || ||||| || Sbjct 607755 TGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTC 607696 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 || || |||| | |||||| | || | | || ||||| ||| |||| Sbjct 607695 GAAGCTCTGTACGAGAGCTACGAAAAGCAGAACAAGGGTCGCGAGACTGTTCG-CGCACA 607637 Query 97175 AGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234 | | || ||| | |||||| | ||| ||| |||||||| | || | || ||||| Sbjct 607636 AAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTTTATGCTCTA 607577 Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294 |||||| | || ||||| |||||||| || | || |||||| ||||||| Sbjct 607576 CAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTCCAA 607517 Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 |||||||| || ||||| |||||| || |||| || ||| || |||||| Sbjct 607516 CCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTGC 607465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058949892520