Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq23 91.5 1e-13 >seq23 Length=2828041 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| || || ||||| || | | ||| | |||| || Sbjct 925932 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 925873 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| || |||| || | |||||| || || | ||||| ||||| Sbjct 925872 CAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 925813 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||||| | | ||| || |||| || ||| ||| | |||||||| || Sbjct 925812 GATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTT 925753 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| |||||||| || ||||| Sbjct 925752 TCCGGTAAGAGTCTTGACAAAGATCTGCAT 925723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572663579638