Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq27 114 2e-21 >seq27 Length=2456559 Score = 114 bits (126), Expect = 2e-21 Identities = 216/328 (66%), Gaps = 55/328 (17%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || ||||| ||||| |||| Sbjct 1819465 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACTAAGCCCGCTA 1819407 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAA------------------GCGTG------ 16526 |||||||||| |||||||||||||| ||||| || || Sbjct 1819406 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCAGCCAGTAAGCATGCCCAAC 1819347 Query 16527 ----------TCT-------------------CTGGATTGGTCTATGAAGAGATTCGTGA 16557 ||| ||| | || |||| ||||||| |||| Sbjct 1819346 ATCGTCGCTATCTAGGACAAATCCTAACATGACTGCAGTGATCTACGAAGAGACCCGTGG 1819287 Query 16558 TGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| | |||| ||||||| ||| |||||||| ||| || || ||| || |||||||| Sbjct 1819286 TGTCCTCAAGACCTTCCTCGAGAGCGTTATCCGTGACGCCGTCACCTACACTGAGCACGC 1819227 Query 16618 TAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAA 16677 || || ||||||||||||||| | || | ||||| || | || || || ||||||| Sbjct 1819226 CAAGCGCAAGACTGTCACCTCCCTCGACGTTGTCTACGCTCTCAAGCGCCAGGGCCGTAC 1819167 Query 16678 GATTTATGGTTTTGGAAGTTAATCTTCT 16705 | || ||||| || ||||| | ||| Sbjct 1819166 CCTCTACGGTTTCGGTGGTTAAACATCT 1819139 Score = 104 bits (114), Expect = 4e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| |||||| || |||||||| || ||||| ||||| ||||| Sbjct 253390 GCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACAAAGCCCGCTAT 253448 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || ||||||||||| ||||||||| |||| Sbjct 253449 CCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 253487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075175313711