Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq21 167 3e-36
>seq21
Length=3333843
Score = 167 bits (184), Expect = 3e-36
Identities = 610/939 (65%), Gaps = 22/939 (2%)
Strand=Plus/Plus
Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196
|||||| || || || | |||| | | | ||||| || || | ||| ||||||| |
Sbjct 607693 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 607752
Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256
||| | |||| || | || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 607753 CCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 607812
Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316
||||| | | | ||||| || || ||||| || || ||||| | |
Sbjct 607813 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAA 607872
Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376
| |||| ||||| || || | ||| ||||| | | || || || ||||| || ||
Sbjct 607873 GACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACC 607932
Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436
||| || | || | ||| ||||| || || || | | ||| ||||| | |||||| ||
Sbjct 607933 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 607992
Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 63494
| | || || || || ||| || ||| | |||||||| | | ||| ||
Sbjct 607993 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 608050
Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554
|| || || || || | || ||||| || || || || | ||||| || || ||
Sbjct 608051 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 608110
Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAG 63612
|| || || || || |||||| | || || || ||||||| ||||| | |
Sbjct 608111 TCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATG--GTG 608168
Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63671
| ||||| || || || || || || ||||| || || | |||| ||| | |||| | |
Sbjct 608169 TGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCG 608227
Query 63672 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63730
|| ||||| || ||| || || || || | ||||| || || || |||||||| |
Sbjct 608228 TAGGTCTCGATGGCTTTCTCGATGTCATCACCG-TGAATGCCAACAGCAACACGCATGAG 608286
Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790
|||||| || || | || ||| |||| |||||| | | || || || |
Sbjct 608287 CATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAGCGCTCAAG 608346
Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850
|| || |||||||| | | ||| ||||| || ||||| | ||| ||||||||||
Sbjct 608347 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAG 608406
Query 63851 TTTATCCTTATATTTGTTAACTATATCCATGGTGAT---ACTTGAAATAATCGG-AGAAT 63906
| || | | | | | ||| || || ||| | ||| || || || | |
Sbjct 608407 CTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCTGAGATCATGGGTTGTCT 608463
Query 63907 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 63966
||| || || || || || ||||||||| | | ||| || | || | ||| | |
Sbjct 608464 CTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCT 608522
Query 63967 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64026
| ||||| | |||||| ||||||||||| || || | || || || || || ||||| |
Sbjct 608523 TCTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAATCGG 608582
Query 64027 GATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064
|||| |||| | || || |||||| | ||||| |||
Sbjct 608583 GATG-TGTGGTGGTCATGTAGGCTGCGGTCTCGGCGGCC 608620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946989755320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |