Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq21 266 8e-66 >seq21 Length=3333843 Score = 266 bits (294), Expect = 8e-66 Identities = 533/779 (68%), Gaps = 12/779 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| |||| || ||| ||| || || || | || || ||||| || Sbjct 608205 TTCACACACGCCTCGCCGACGTTGTTCAACGCGGGCACACCATCACCGCAAATGTCGTCA 608146 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || ||||| || || | |||||||| |||| Sbjct 608145 TGCTTCCTCATCGACATGAAGGAGGACAGTATCGACGGCATTTACGACACACTCAAGACC 608086 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || ||||| ||||| | | || | ||| ||||||| Sbjct 608085 TGTGCGTTGATCTCCAAGACCGCTGGCGGTATTGGCCTCAACG-TGCACCGCATTCGTGC 608027 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | ||||| | ||||| ||| || || || || |||||||||| | Sbjct 608026 TACTGG-CTCATACATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCC 607968 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| | |||| ||||| | || |||||||||||||| ||||| ||| || | Sbjct 607967 GTGTATACAACAACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCT 607908 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | || || || || ||||| || || || | |||| || ||||| || || || | Sbjct 607907 TCGCCATCTACCTAGAGCCATGGCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAGA 607848 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || ||||| | || || || ||||| ||||| || || ||| || |||||| Sbjct 607847 ACCACGGCAAGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACC 607788 Query 363965 ATTTTATGAAGCGCGTGGAGG-CAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAAT 364021 || |||||||| || | | || | | || ||| |||| | ||||| |||| | Sbjct 607787 TCTTCATGAAGCGTGTCCAAGACA---ACGGCAACTGGACACTGATGTGCCCGAACGAGT 607731 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || || ||||||| | ||||| || | | ||||| ||||| | || ||| Sbjct 607730 GCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAAA 607671 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 | || |||| ||| |||| ||| |||||| ||||| |||| |||||| | || Sbjct 607670 AGCAGAACAAGGGTCGCGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGG 607611 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| ||||| || | |||| |||| | ||||| || | |||||||||||| || Sbjct 607610 CACAGACCGAGACTGGTAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCA 607551 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||| ||||| || | |||| | ||||| || || |||||| | || ||| Sbjct 607550 ACCAGAAGAACCTCGGTACCATCC-GCAGCTCCAACCTGTGCACTGAGATTGTGGAGTAC 607492 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 |||||||| || ||| || || || ||| | || || | || || || | ||||| Sbjct 607491 ACCGCTCCTGATGAGGTCGCTGTTTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGT 607433 Score = 158 bits (174), Expect = 3e-33 Identities = 360/542 (66%), Gaps = 0/542 (0%) Strand=Plus/Minus Query 364615 ACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACG 364674 || || || || || || | || ||||| | |||||| ||| | ||||||||||| Sbjct 607131 ACCTACGAAGGATCTCCCGTATCCCAGGGTATCCTCCAGTACGATATGTGGAATGTCACA 607072 Query 364675 CCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734 || ||| || ||| |||||| | || || || |||| ||| ||| Sbjct 607071 CCTACTGACCTCTGGGACTGGGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGC 607012 Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 ||||| || | | || |||||||| || || || ||| ||||||| || || |||||| Sbjct 607011 AACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAAC 606952 Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 ||||||||||| || | || ||| | ||||| ||||| || || | || || || Sbjct 606951 GAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTC 606892 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914 | ||| || || | | ||||||| ||| |||| || |||||| ||| | | Sbjct 606891 CAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAAC 606832 Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974 ||||||||| ||||||||||| | |||||| | | ||||| | || || Sbjct 606831 ATGAAGAACCGTATCATCGCCGATGGAGGTTCTATTGCCAGGATTCCCAACATCCCTGAG 606772 Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATG 365034 || ||| || ||||||| ||||| ||||| || || ||||| ||||||| ||| Sbjct 606771 GAGACAAAGACTCTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGGATCATTGAGATG 606712 Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG 365094 || || || || |||||||| || ||| |||||| | ||| | ||||| || Sbjct 606711 GCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAGTCGCTAAACATCCACATGAAGGAG 606652 Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACA 365154 || || | |||| | || || ||||| || || ||||| | ||||| ||||| Sbjct 606651 CCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTGAAGACT 606592 Query 365155 GG 365156 || Sbjct 606591 GG 606590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353149121114