Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq21 266 8e-66
>seq21
Length=3333843
Score = 266 bits (294), Expect = 8e-66
Identities = 533/779 (68%), Gaps = 12/779 (2%)
Strand=Plus/Minus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| |||||| |||| || ||| ||| || || || | || || ||||| ||
Sbjct 608205 TTCACACACGCCTCGCCGACGTTGTTCAACGCGGGCACACCATCACCGCAAATGTCGTCA 608146
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| || ||||| || || | |||||||| ||||
Sbjct 608145 TGCTTCCTCATCGACATGAAGGAGGACAGTATCGACGGCATTTACGACACACTCAAGACC 608086
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725
||||| | || ||||||| || ||||| ||||| | | || | ||| |||||||
Sbjct 608085 TGTGCGTTGATCTCCAAGACCGCTGGCGGTATTGGCCTCAACG-TGCACCGCATTCGTGC 608027
Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784
|| | | ||||| | ||||| ||| || || || || |||||||||| |
Sbjct 608026 TACTGG-CTCATACATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCC 607968
Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844
|||| | |||| ||||| | || |||||||||||||| ||||| ||| || |
Sbjct 607967 GTGTATACAACAACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCT 607908
Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904
| || || || || ||||| || || || | |||| || ||||| || || || |
Sbjct 607907 TCGCCATCTACCTAGAGCCATGGCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAGA 607848
Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964
|| || || ||||| | || || || ||||| ||||| || || ||| || ||||||
Sbjct 607847 ACCACGGCAAGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACC 607788
Query 363965 ATTTTATGAAGCGCGTGGAGG-CAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAAT 364021
|| |||||||| || | | || | | || ||| |||| | ||||| |||| |
Sbjct 607787 TCTTCATGAAGCGTGTCCAAGACA---ACGGCAACTGGACACTGATGTGCCCGAACGAGT 607731
Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081
| || || || ||||||| | ||||| || | | ||||| ||||| | || |||
Sbjct 607730 GCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAAA 607671
Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141
| || |||| ||| |||| ||| |||||| ||||| |||| |||||| | ||
Sbjct 607670 AGCAGAACAAGGGTCGCGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGG 607611
Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201
| |||| ||||| || | |||| |||| | ||||| || | |||||||||||| ||
Sbjct 607610 CACAGACCGAGACTGGTAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCA 607551
Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260
||||| || |||| ||||| || | |||| | ||||| || || |||||| | || |||
Sbjct 607550 ACCAGAAGAACCTCGGTACCATCC-GCAGCTCCAACCTGTGCACTGAGATTGTGGAGTAC 607492
Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319
|||||||| || ||| || || || ||| | || || | || || || | |||||
Sbjct 607491 ACCGCTCCTGATGAGGTCGCTGTTTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGT 607433
Score = 158 bits (174), Expect = 3e-33
Identities = 360/542 (66%), Gaps = 0/542 (0%)
Strand=Plus/Minus
Query 364615 ACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACG 364674
|| || || || || || | || ||||| | |||||| ||| | |||||||||||
Sbjct 607131 ACCTACGAAGGATCTCCCGTATCCCAGGGTATCCTCCAGTACGATATGTGGAATGTCACA 607072
Query 364675 CCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734
|| ||| || ||| |||||| | || || || |||| ||| |||
Sbjct 607071 CCTACTGACCTCTGGGACTGGGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGC 607012
Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794
||||| || | | || |||||||| || || || ||| ||||||| || || ||||||
Sbjct 607011 AACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAAC 606952
Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854
||||||||||| || | || ||| | ||||| ||||| || || | || || ||
Sbjct 606951 GAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTC 606892
Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914
| ||| || || | | ||||||| ||| |||| || |||||| ||| | |
Sbjct 606891 CAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAAC 606832
Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974
||||||||| ||||||||||| | |||||| | | ||||| | || ||
Sbjct 606831 ATGAAGAACCGTATCATCGCCGATGGAGGTTCTATTGCCAGGATTCCCAACATCCCTGAG 606772
Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATG 365034
|| ||| || ||||||| ||||| ||||| || || ||||| ||||||| |||
Sbjct 606771 GAGACAAAGACTCTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGGATCATTGAGATG 606712
Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG 365094
|| || || || |||||||| || ||| |||||| | ||| | ||||| ||
Sbjct 606711 GCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAGTCGCTAAACATCCACATGAAGGAG 606652
Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACA 365154
|| || | |||| | || || ||||| || || ||||| | ||||| |||||
Sbjct 606651 CCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTGAAGACT 606592
Query 365155 GG 365156
||
Sbjct 606591 GG 606590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303353149121114
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |