Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq21 201 1e-46 seq23 113 4e-20 seq12 84.2 2e-11 >seq21 Length=3333843 Score = 201 bits (222), Expect = 1e-46 Identities = 925/1451 (64%), Gaps = 45/1451 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| || || | ||||| || |||| | ||| || ||| | || Sbjct 606881 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 606940 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| |||||||| || || | || | || || |||||| || | Sbjct 606941 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 607000 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | ||||||| || | ||||| || | |||| ||||| Sbjct 607001 AGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 607060 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || ||| || | || | |||||| |||||||| | || |||| | |||| Sbjct 607061 AGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGAT 607120 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 |||| ||| ||||| ||| ||||| || |||| ||||| | |||| Sbjct 607121 CCTTCGTAGGTCTTGTAAGGGCC--AAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAG 607178 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 | | || || |||||| ||||| |||||||| | | ||||| || |||| Sbjct 607179 CAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGA 607238 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | || | ||| || | || |||||||| || || || | |||| |||||||| | Sbjct 607239 AAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTC 607298 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTT 145535 | || | |||||| | ||| |||| ||| || | || ||||| || | Sbjct 607299 GGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTCGATGATCT 607358 Query 145536 TATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC---C 145592 | |||||||| || || |||| ||| | | | | ||| | ||||||||| | Sbjct 607359 TGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACGC 607418 Query 145593 GAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 |||| || |||| | | | | | ||| | || ||||| || ||||| || Sbjct 607419 CGGCCTTGTAGTCGACAAAAGA---AGGCAGGGCAAGAGAAGCCAAGTTGCAAACAGCGA 607475 Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 ||| || | || |||| | || ||||| | ||||| ||| | |||||| | Sbjct 607476 CCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTAC 607535 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 | || || | ||| || || || | |||||| ||||||||||||||||| | || | Sbjct 607536 CGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTAC 607595 Query 145773 CAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCT--GCGCACGCACCTGCTG 145830 ||||||| ||| | ||| | ||| || ||| | | | || || || || Sbjct 607596 CAGTCTCGGTCTGTGCCTCAAGGATGG--CGTACCAAAGCTTTTGTGCGCGAACAGTCTC 607653 Query 145831 CTGGTAGCGGCCCTC-TTCT-----TCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884 ||| |||| |||| ||||| || ||| || | || || | ||| Sbjct 607654 ------GCGACCCTTGTTCTGCTTTTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACC 607707 Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944 |||| ||||| ||||| || |||| ||| || |||||||| | ||| ||||||| | Sbjct 607708 GTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTC 607767 Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTT 146004 | ||| |||| ||| || | || || | |||||| ||||| | | ||||| || Sbjct 607768 TTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCG 607827 Query 146005 GCAATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCC 146063 | ||||| || ||| | || || | ||| | || | ||| ||| ||||||| Sbjct 607828 GACCTCCTCCTTGCCGTGGTTCTTGCG-CAGGTCAAGGAAACCAAAGACGTCAGCGTGCC 607886 Query 146064 ACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGAC 146120 | || || | |||| ||||| ||| ||| || ||| ||||||||||| || | | Sbjct 607887 ATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAGC 607946 Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT-- 146178 | | ||||||| | || || | |||||| || ||| | | | ||||| || Sbjct 607947 GAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGC 608006 Query 146179 -AGAGTT-TATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236 | | | ||| | ||| | || | || || || || | ||| | |||||| Sbjct 608007 CACCGATGTAT----GAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCA 608062 Query 146237 CCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 || |||||| || || ||| ||| || ||||| |||||||| || || || Sbjct 608063 GCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATACTGTCC 608122 Query 146297 --CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGA 146354 |||| ||| ||| || ||||| || |||| |||| || || ||||| || Sbjct 608123 TCCTTC--ATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCCCGCGTTGA 608180 Query 146355 ACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATC-ATCCGATACGTTTCGATA 146413 |||||||||| ||||| || || ||| | ||| | || || || ||||| Sbjct 608181 ACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCG-TAGGTCTCGATG 608239 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 || | | ||||| || || |||||||| | ||| || ||||||||||||||||| || Sbjct 608240 GCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGG 608299 Query 146474 CGCTCCGCCAC 146484 ||||| || || Sbjct 608300 CGCTCGGCGAC 608310 Score = 150 bits (166), Expect = 2e-31 Identities = 350/518 (68%), Gaps = 15/518 (3%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | |||||||| |||||||||| || |||||| | || | | | Sbjct 2203855 ATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAAGAACTCC 2203796 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || |||||| | || | || || || || ||| ||||| |||| || || | Sbjct 2203795 ACATTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCT 2203736 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 || ||| ||||||| | |||| || | || | | |||||||| || || || ||| Sbjct 2203735 TTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTC-TGATGCCCGGTCTAACATTCTCCAA 2203677 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTG---TCTCTACTATAA 46319 |||||| || || || ||||||||| |||| || ||||| || || ||||| || | Sbjct 2203676 CGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCT 2203617 Query 46320 CACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC-ATGTTCAAGGAGGCGG 46378 | |||| | || | | ||| || || | || | |||| || ||| || || | Sbjct 2203616 C-CTCGAGAACAAGCCCAGC-----CCAGAGTCTGT-CAGAGCTATCATCACTGAAGCCG 2203564 Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACG 46438 | | |||||| ||||||| || | | |||||| || || ||||| |||||||||| Sbjct 2203563 TCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACG 2203504 Query 46439 C-ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCAC 46497 | || ||| ||||| | ||||||||||| || || ||||| ||||| || || | Sbjct 2203503 CTACTCTCA-TGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGC 2203445 Query 46498 CAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557 | ||| | ||||| ||| || || || || ||| | ||||| || |||| Sbjct 2203444 AACGTCAAGGTCTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCT 2203385 Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || || || || || ||||| |||||||||||||| || Sbjct 2203384 GGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 2203347 >seq23 Length=2828041 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | || ||||||||||| |||||||| ||| Sbjct 925721 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 925662 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | |||||| || ||| |||| | |||||| ||||||||||| Sbjct 925661 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 925602 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | ||| ||| | || || | Sbjct 925601 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 925542 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || ||||| || ||||| Sbjct 925541 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| || || | || |||||||| || |||||||| || Sbjct 925949 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 925890 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| | || | |||||||||||| |||||| Sbjct 925889 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGG 925830 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || ||| | ||||||| Sbjct 925829 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACT 925770 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || ||||| ||||| || || || |||||||| Sbjct 925769 TCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 925723 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||| || ||||| || |||||||| ||| | Sbjct 925212 CCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 925153 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 925152 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 925093 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||| || | ||||| | Sbjct 925092 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACC 925033 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 925032 TCGAGGGTGATGGTCTTTCCGGT 925010 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || || || | || | || |||||||| ||||||||||| ||| | Sbjct 925493 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 925434 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| || ||||| || ||| |||| | || ||||| ||||||||| Sbjct 925433 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 925374 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 925373 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 925314 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | || | ||| || ||||| Sbjct 925313 TCAAGAGTGATGGTCTTGCCGGT 925291 >seq12 Length=3815900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | ||| |||||||| || |||||||| || Sbjct 2951385 CCACCACGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 2951444 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| | ||||||||||||||| || Sbjct 2951445 AGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 2951504 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 2951505 ATGCCCTCCTTGTC 2951518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012640695680