Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq21 172 7e-38 >seq21 Length=3333843 Score = 172 bits (190), Expect = 7e-38 Identities = 609/938 (65%), Gaps = 20/938 (2%) Strand=Plus/Plus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 |||||| || || || | |||| | | || ||||| || || | ||| ||||||| | Sbjct 607693 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 607752 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| | |||| || | || || ||||| ||||| ||||||||||| ||||| || Sbjct 607753 CCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 607812 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||| | | | ||||| || || ||||| || || ||||| | | Sbjct 607813 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAA 607872 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | |||| ||||| || || | ||| ||||| | | || || || ||||| || || Sbjct 607873 GACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACC 607932 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | || | ||| ||||| || || || | | ||| ||||| | ||| || || Sbjct 607933 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 607992 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 63349 ||| || || || || ||| || ||| | |||||||| | | ||| || Sbjct 607993 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 608050 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || || || || | || ||||| || || || || | || || || ||||| Sbjct 608051 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 608110 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAG 63467 || ||||| || ||| |||||| | || || || ||||||| ||||| | | Sbjct 608111 TCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATG--GTG 608168 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTG 63526 | ||||| || || || || || || ||||| || || | |||| ||| | |||| | | Sbjct 608169 TGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCG 608227 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || ||||| || ||| || || || || | ||||| || || || |||||||| | Sbjct 608228 TAGGTCTCGATGGCTTTCTCGATGTCATCACCG-TGAATGCCAACAGCAACACGCATGAG 608286 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| || || | || ||| |||| |||||| | | || || || | Sbjct 608287 CATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAGCGCTCAAG 608346 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 || || |||||||| | | ||| ||||| || ||||| | ||| |||||||||| Sbjct 608347 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAG 608406 Query 63706 TTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGT-- 63763 | || | | || | | || | | | | ||| || || || ||| Sbjct 608407 CTCGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCTGAGATCATGGG---TTGTCT 608463 Query 63764 -TTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63822 || || || || || |||||||||||| | | ||| || | || | ||| | || Sbjct 608464 CTTTCCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCTT 608523 Query 63823 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 63882 ||||| | ||||| ||||||||||| || || | || || || || || ||||| || Sbjct 608524 CTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAATCGGG 608583 Query 63883 ATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 63919 ||| |||| | || || |||||| | ||||| ||| Sbjct 608584 ATG-TGTGGTGGTCATGTAGGCTGCGGTCTCGGCGGCC 608620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631786149200