Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq21 172 7e-38
>seq21
Length=3333843
Score = 172 bits (190), Expect = 7e-38
Identities = 609/938 (65%), Gaps = 20/938 (2%)
Strand=Plus/Plus
Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051
|||||| || || || | |||| | | || ||||| || || | ||| ||||||| |
Sbjct 607693 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 607752
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111
||| | |||| || | || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 607753 CCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 607812
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
||||| | | | ||||| || || ||||| || || ||||| | |
Sbjct 607813 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAA 607872
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
| |||| ||||| || || | ||| ||||| | | || || || ||||| || ||
Sbjct 607873 GACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACC 607932
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
||| || | || | ||| ||||| || || || | | ||| ||||| | ||| || ||
Sbjct 607933 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 607992
Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 63349
||| || || || || ||| || ||| | |||||||| | | ||| ||
Sbjct 607993 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 608050
Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409
|| || || || || | || ||||| || || || || | || || || |||||
Sbjct 608051 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 608110
Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAG 63467
|| ||||| || ||| |||||| | || || || ||||||| ||||| | |
Sbjct 608111 TCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATG--GTG 608168
Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTG 63526
| ||||| || || || || || || ||||| || || | |||| ||| | |||| | |
Sbjct 608169 TGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCG 608227
Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| ||||| || ||| || || || || | ||||| || || || |||||||| |
Sbjct 608228 TAGGTCTCGATGGCTTTCTCGATGTCATCACCG-TGAATGCCAACAGCAACACGCATGAG 608286
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645
|||||| || || | || ||| |||| |||||| | | || || || |
Sbjct 608287 CATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAGCGCTCAAG 608346
Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705
|| || |||||||| | | ||| ||||| || ||||| | ||| ||||||||||
Sbjct 608347 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAG 608406
Query 63706 TTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGT-- 63763
| || | | || | | || | | | | ||| || || || |||
Sbjct 608407 CTCGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCTGAGATCATGGG---TTGTCT 608463
Query 63764 -TTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63822
|| || || || || |||||||||||| | | ||| || | || | ||| | ||
Sbjct 608464 CTTTCCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCTT 608523
Query 63823 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 63882
||||| | ||||| ||||||||||| || || | || || || || || ||||| ||
Sbjct 608524 CTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAATCGGG 608583
Query 63883 ATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 63919
||| |||| | || || |||||| | ||||| |||
Sbjct 608584 ATG-TGTGGTGGTCATGTAGGCTGCGGTCTCGGCGGCC 608620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631786149200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |