Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 3e-19
seq26 91.5 3e-13
>seq2
Length=2381493
Score = 111 bits (122), Expect = 3e-19
Identities = 173/245 (71%), Gaps = 13/245 (5%)
Strand=Plus/Minus
Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754
||| || |||||||| ||||| |||||||||||||| || | | || || || || |
Sbjct 726006 AGTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGCTCGCTTTGGCGCGTGCTATGCTTAT 725947
Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814
||| ||||| || || || || || || || ||||||||| |||| ||||||| ||
Sbjct 725946 GCGCGCCGACGTGCTTCTTCTCGACGAACCCACCAACCACTTGGATGTTGCCAACGTTGC 725887
Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA-----AGAATGTTTCTTCCCTCATTGTCTCT 279869
|||||| | ||||| | ||||| | ||| || || | | || ||||||
Sbjct 725886 CTGGCTCGGAAAGTACCT--CAAGTCTCACACCGAGA---TTACTAGCTTGATCGTCTCT 725832
Query 279870 CACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTG 279929
|||||||| || ||||| || | || ||| | | |||| ||||| |||||||| |
Sbjct 725831 CACGACTCCGGTTTCCTTGACGAGGTCTGCACAGACATCTACCACTACGAGCAAAA---G 725775
Query 279930 AAGCT 279934
|||||
Sbjct 725774 AAGCT 725770
Score = 98.7 bits (108), Expect = 2e-15
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235
||||| |||| ||||| ||||| ||||| || || || | || |||||||||| | |
Sbjct 725525 ATTGGCGCCAACGGTGCTGGTAAATCTACTCTCATTAAGATGCTTACTGGCGAGA-CTAT 725467
Query 280236 GCCAC-TGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294
|| | ||||| |||| |||||| |||||| |||| || | |||| || |||||
Sbjct 725466 TCCTCAAGAGGGTACCGTCGAGAAGCACCCCAACTTGCGTATCGGTTACATCAAGCAGCA 725407
Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354
|||| || | ||| |||||| ||| |||| | ||| || ||||| || | || |||||
Sbjct 725406 CGCTCTCGAGCACGTCGAGATGCACATGGAGAAGACGCCCAACCAGTATCTCCAATGGCG 725347
Query 280355 CTATGC 280360
|| ||
Sbjct 725346 ATACGC 725341
>seq26
Length=2547288
Score = 91.5 bits (100), Expect = 3e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437
|| || |||| ||||||||||| ||| |||| ||| |||||||||| | ||
Sbjct 539220 GCCTACGGTGCTAAGATTCTGCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGCGT 539279
Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497
|| |||||| |||| ||||| || | || |||| |||||| |||||||| || |||
Sbjct 539280 TACGGTCTCCTCGGACCCAACGGTTCCGGAAAGACCACTCTCATGCGCGCTATCAACAAC 539339
Query 279498 GGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557
| ||| | || || || || || | ||||| | ||| || || || |||||||||
Sbjct 539340 GAGCAGGTCGAGGGTTTCCCCAAGCAAAACGAGGTCAAGACCGTCTACGTCGAGCACGAC 539399
Query 279558 ATCGACTC 279565
| |||||
Sbjct 539400 TTGGACTC 539407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836444432707
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |