Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 111 3e-19 seq26 91.5 3e-13 >seq2 Length=2381493 Score = 111 bits (122), Expect = 3e-19 Identities = 173/245 (71%), Gaps = 13/245 (5%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || |||||||| ||||| |||||||||||||| || | | || || || || | Sbjct 726006 AGTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGCTCGCTTTGGCGCGTGCTATGCTTAT 725947 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||| ||||| || || || || || || || ||||||||| |||| ||||||| || Sbjct 725946 GCGCGCCGACGTGCTTCTTCTCGACGAACCCACCAACCACTTGGATGTTGCCAACGTTGC 725887 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA-----AGAATGTTTCTTCCCTCATTGTCTCT 279869 |||||| | ||||| | ||||| | ||| || || | | || |||||| Sbjct 725886 CTGGCTCGGAAAGTACCT--CAAGTCTCACACCGAGA---TTACTAGCTTGATCGTCTCT 725832 Query 279870 CACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTG 279929 |||||||| || ||||| || | || ||| | | |||| ||||| |||||||| | Sbjct 725831 CACGACTCCGGTTTCCTTGACGAGGTCTGCACAGACATCTACCACTACGAGCAAAA---G 725775 Query 279930 AAGCT 279934 ||||| Sbjct 725774 AAGCT 725770 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235 ||||| |||| ||||| ||||| ||||| || || || | || |||||||||| | | Sbjct 725525 ATTGGCGCCAACGGTGCTGGTAAATCTACTCTCATTAAGATGCTTACTGGCGAGA-CTAT 725467 Query 280236 GCCAC-TGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 || | ||||| |||| |||||| |||||| |||| || | |||| || ||||| Sbjct 725466 TCCTCAAGAGGGTACCGTCGAGAAGCACCCCAACTTGCGTATCGGTTACATCAAGCAGCA 725407 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 |||| || | ||| |||||| ||| |||| | ||| || ||||| || | || ||||| Sbjct 725406 CGCTCTCGAGCACGTCGAGATGCACATGGAGAAGACGCCCAACCAGTATCTCCAATGGCG 725347 Query 280355 CTATGC 280360 || || Sbjct 725346 ATACGC 725341 >seq26 Length=2547288 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437 || || |||| ||||||||||| ||| |||| ||| |||||||||| | || Sbjct 539220 GCCTACGGTGCTAAGATTCTGCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGCGT 539279 Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497 || |||||| |||| ||||| || | || |||| |||||| |||||||| || ||| Sbjct 539280 TACGGTCTCCTCGGACCCAACGGTTCCGGAAAGACCACTCTCATGCGCGCTATCAACAAC 539339 Query 279498 GGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557 | ||| | || || || || || | ||||| | ||| || || || ||||||||| Sbjct 539340 GAGCAGGTCGAGGGTTTCCCCAAGCAAAACGAGGTCAAGACCGTCTACGTCGAGCACGAC 539399 Query 279558 ATCGACTC 279565 | ||||| Sbjct 539400 TTGGACTC 539407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836444432707