Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq21 205 2e-47 seq23 188 1e-42 >seq21 Length=3333843 Score = 205 bits (226), Expect = 2e-47 Identities = 575/867 (66%), Gaps = 27/867 (3%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| ||| || | Sbjct 2203328 CATGACACCGGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGC 2203387 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || |||||| |||||||||||| |||||||| |||| | |||| || || Sbjct 2203388 CAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCC 2203447 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | |||||||| |||||||||||||| |||| ||| || | ||| Sbjct 2203448 GAGGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTT 2203507 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || ||| || | ||||||| | ||| |||| || | |||| || Sbjct 2203508 CATGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGC 2203567 Query 10175 TTCCTCGACGAT-GCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACA 10233 ||| || ||| |||| | || || || ||||||||||||| || | | Sbjct 2203568 TTCAGTGATGATAGCTC-TGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGAAGA 2203626 Query 10234 GGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293 | || | || | ||| | ||||||||| ||| ||||| ||||||||| || Sbjct 2203627 GAAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATG 2203686 Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGA 10353 ||||||||||| || || || || |||||||| |||| | ||| || ||| || Sbjct 2203687 TTAGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGA 2203746 Query 10354 ACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA---GGAGCGGTCGC 10410 | | | |||||| || | | || |||||||| | ||||| |||| | | Sbjct 2203747 AGAAGATACCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGT 2203806 Query 10411 GCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAG 10470 || | || | |||||| | |||||||| | | | ||||| | ||||| | Sbjct 2203807 CGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGG 2203866 Query 10471 CCTCGAAGAG---CTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGG 10527 | | |||||| | || ||| || |||| || ||| | || | |||||| | Sbjct 2203867 CGTTGAAGAGGTACCTGCGCTGCTTGGGCTCG--CT-AATGTATGTGTCGATGAGCAGAG 2203923 Query 10528 AGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCC 10586 |||| ||| ||| ||| |||| | ||| || ||||||| ||| |||||| Sbjct 2203924 AGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCAT-CGTGCC 2203982 Query 10587 GAGGGG-TCCGTGACTTC-CTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCACCATGCCA 10643 |||| | || ||||| || | | | | | | | |||||||| | || |||||| Sbjct 2203983 TCGGGGATTTGT-ACTTCGCTAG--AGAATCGCTCAACAAGGTTCTCGTTGACAATGCCA 2204039 Query 10644 TCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG- 10702 ||| | |||| |||||| |||||| ||| ||||||| |||||| |||||||| || Sbjct 2204040 TCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGA 2204099 Query 10703 ---TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAA 10759 || || |||||| | |||| | ||| | || |||||| |||||||||| Sbjct 2204100 CGCTTGTT----CCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAA 2204155 Query 10760 AGTGGCAACGGCCTTCTTGTACATCTG 10786 || || ||||||||||||||||||| Sbjct 2204156 AGAAGCCTCGGCCTTCTTGTACATCTG 2204182 >seq23 Length=2828041 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || |||||||| ||||||||||| || |||||| Sbjct 925721 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 925662 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| |||||||| |||||||| ||||| | |||||||| || ||| Sbjct 925661 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 925602 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| | ||||||| || || ||||| |||||| || Sbjct 925601 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 925542 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || |||||||||||||| || ||||| Sbjct 925541 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| || |||||||| || || ||||| || ||||| Sbjct 925493 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 925434 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || || | ||| || || || || Sbjct 925433 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 925374 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||||| ||||||| ||||||||||| | ||| || || Sbjct 925373 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 925314 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| || || || Sbjct 925313 TCAAGAGTGATGGTCTTGCCGGT 925291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622088952440