Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq21 333 5e-86
>seq21
Length=3333843
Score = 333 bits (368), Expect = 5e-86
Identities = 599/861 (70%), Gaps = 32/861 (4%)
Strand=Plus/Minus
Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360
||||| |||||||||||||| || || ||||||||| |||||||| |||||
Sbjct 2204187 TCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCT 2204128
Query 42361 CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAA 42416
|||||||| || |||| | | |||| | || |||| || ||| ||
Sbjct 2204127 CCAAGGACCTTCACGACTGGAACAAGC-GTCTCAACGATGACGAGCGCTTCTTCATCTCC 2204069
Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476
|| | || ||||||||||| ||||| || ||||| ||||| |||||||| | |
Sbjct 2204068 CACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGA 2204009
Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536
||| | || || || | ||||| || ||||||||||| ||||| || ||
Sbjct 2204008 TTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATG 2203949
Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593
|||||||| ||||| ||| ||| | ||||||| |||| ||||| || |||
Sbjct 2203948 GAGAACGTTCACTCAGAGACCTACTCT---CTGCTCATCGACACATACATTAGCGAGCCC 2203892
Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653
|||| | || ||||| ||||| || | || ||||||||| ||||||||
Sbjct 2203891 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 2203832
Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGC 42712
|||||||| || |||||| | | || | | || |||| | | | || || ||
Sbjct 2203831 GACTGGGCCCTGCGATGGATCTCC-GACAAGAACTCCACATTCGCCAACCGCCTCGTTGC 2203773
Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772
|| |||| || ||||| ||||||||| || | |||||||||||||||||||||||
Sbjct 2203772 ATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAA 2203713
Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831
| || ||| | ||||||||| || || ||||| ||||| |||||| | | |||||||
Sbjct 2203712 GAAGCGCGGTCT-GATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGG 2203654
Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891
| |||| | ||||| |||||||| || ||||| | |||| | ||||||||
Sbjct 2203653 GCATGCACACCGACTTCGCCTGCCTTCTCTTCTC---TCTCCTCGAGAACAAGCCCAGCC 2203597
Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951
||| ||| | || |||||||| || ||||| ||||| ||| |||||||| | |
Sbjct 2203596 CAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCG 2203537
Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAG 43010
| | || || | ||| |||||||||| | | || ||||||||| | |||||| ||
Sbjct 2203536 ACGCACTACCATGCGCTCTGCTCGGCATGAA-CGCTACTCTCATGTGCCAATACATCGAG 2203478
Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCTACAACACG 43064
| |||||| |||| ||| |||| ||| ||| || || | ||||| || |
Sbjct 2203477 TTCGTCGCTGACCGTCTGCTGT------TGGCCCTCGGCAACGTCAAGGTCTACCACGCC 2203424
Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124
| |||||||||||| ||||||||||| || ||| || ||||||||||| ||||||
Sbjct 2203423 ACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAG 2203364
Query 43125 AAGCGCGTCGCCGACTACCAG 43145
|||||||||| ||||||||||
Sbjct 2203363 AAGCGCGTCGGCGACTACCAG 2203343
Score = 248 bits (274), Expect = 2e-60
Identities = 516/761 (68%), Gaps = 18/761 (2%)
Strand=Plus/Plus
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747
|||| |||||| || || ||||| || | |||||||| |||||||| ||||| |||
Sbjct 607457 GCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGG 607516
Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807
|| || |||||| || |||| || || ||| |||| |||||| |||||||||
Sbjct 607517 TTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTG 607576
Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867
|||||||| ||||| || |||||| ||| || | |||| | || ||| || |
Sbjct 607577 TAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTT 607636
Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCT--CGTAGCGGGTGTACAGGGCCT 244925
|| || ||| |||| ||||| ||||| | |||||| |||||| || |
Sbjct 607637 TGTGCGCGAACAGTCTCGCGACCCTTGT--TCTGCTTTTCGTAGCTCTCGTACAGAGCTT 607694
Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985
|||| || || |||| ||| | ||||| |||||| ||||||||| || |||
Sbjct 607695 CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCC 607754
Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045
| | |||| ||| | ||| | || |||||||||||| || ||||| || || | |||||
Sbjct 607755 AGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGA 607814
Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105
| || | | | ||| ||| ||| |||||| | ||| || | || ||||||
Sbjct 607815 GATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAAGA 607874
Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165
|||| ||||||| ||||| | ||||| |||| ||| || || ||||||||||| ||||
Sbjct 607875 CGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCT 607934
Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221
|||| | | | ||||| |||| | | || || | || | | ||||||
Sbjct 607935 GGTCGA----CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTA 607990
Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGATGGAC 245278
|| ||||| ||||| |||||| | ||| | || | || || ||| | |
Sbjct 607991 GATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGG-TGC--ACGTTG 608047
Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338
| ||| | ||||| ||| ||||||||| | || ||| |||||| ||||| |||
Sbjct 608048 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 608107
Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398
|| || || |||||| |||||||| || || ||||| || |||| || || ||
Sbjct 608108 CCGTCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGT 608167
Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439
||| || |||||||| || || |||||| || |||||
Sbjct 608168 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 608208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338881285520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |