Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq21 333 5e-86 >seq21 Length=3333843 Score = 333 bits (368), Expect = 5e-86 Identities = 599/861 (70%), Gaps = 32/861 (4%) Strand=Plus/Minus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| |||||||||||||| || || ||||||||| |||||||| ||||| Sbjct 2204187 TCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCT 2204128 Query 42361 CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAA 42416 |||||||| || |||| | | |||| | || |||| || ||| || Sbjct 2204127 CCAAGGACCTTCACGACTGGAACAAGC-GTCTCAACGATGACGAGCGCTTCTTCATCTCC 2204069 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||| ||||| || ||||| ||||| |||||||| | | Sbjct 2204068 CACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGA 2204009 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 ||| | || || || | ||||| || ||||||||||| ||||| || || Sbjct 2204008 TTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATG 2203949 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593 |||||||| ||||| ||| ||| | ||||||| |||| ||||| || ||| Sbjct 2203948 GAGAACGTTCACTCAGAGACCTACTCT---CTGCTCATCGACACATACATTAGCGAGCCC 2203892 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 |||| | || ||||| ||||| || | || ||||||||| |||||||| Sbjct 2203891 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 2203832 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| || |||||| | | || | | || |||| | | | || || || Sbjct 2203831 GACTGGGCCCTGCGATGGATCTCC-GACAAGAACTCCACATTCGCCAACCGCCTCGTTGC 2203773 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 || |||| || ||||| ||||||||| || | ||||||||||||||||||||||| Sbjct 2203772 ATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAA 2203713 Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || ||| | ||||||||| || || ||||| ||||| |||||| | | ||||||| Sbjct 2203712 GAAGCGCGGTCT-GATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGG 2203654 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | |||| | ||||| |||||||| || ||||| | |||| | |||||||| Sbjct 2203653 GCATGCACACCGACTTCGCCTGCCTTCTCTTCTC---TCTCCTCGAGAACAAGCCCAGCC 2203597 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 ||| ||| | || |||||||| || ||||| ||||| ||| |||||||| | | Sbjct 2203596 CAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCG 2203537 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAG 43010 | | || || | ||| |||||||||| | | || ||||||||| | |||||| || Sbjct 2203536 ACGCACTACCATGCGCTCTGCTCGGCATGAA-CGCTACTCTCATGTGCCAATACATCGAG 2203478 Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCTACAACACG 43064 | |||||| |||| ||| |||| ||| ||| || || | ||||| || | Sbjct 2203477 TTCGTCGCTGACCGTCTGCTGT------TGGCCCTCGGCAACGTCAAGGTCTACCACGCC 2203424 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124 | |||||||||||| ||||||||||| || ||| || ||||||||||| |||||| Sbjct 2203423 ACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAG 2203364 Query 43125 AAGCGCGTCGCCGACTACCAG 43145 |||||||||| |||||||||| Sbjct 2203363 AAGCGCGTCGGCGACTACCAG 2203343 Score = 248 bits (274), Expect = 2e-60 Identities = 516/761 (68%), Gaps = 18/761 (2%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||| || || ||||| || | |||||||| |||||||| ||||| ||| Sbjct 607457 GCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGG 607516 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || |||||| || |||| || || ||| |||| |||||| ||||||||| Sbjct 607517 TTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTG 607576 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 |||||||| ||||| || |||||| ||| || | |||| | || ||| || | Sbjct 607577 TAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTT 607636 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCT--CGTAGCGGGTGTACAGGGCCT 244925 || || ||| |||| ||||| ||||| | |||||| |||||| || | Sbjct 607637 TGTGCGCGAACAGTCTCGCGACCCTTGT--TCTGCTTTTCGTAGCTCTCGTACAGAGCTT 607694 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 |||| || || |||| ||| | ||||| |||||| ||||||||| || ||| Sbjct 607695 CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCC 607754 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | | |||| ||| | ||| | || |||||||||||| || ||||| || || | ||||| Sbjct 607755 AGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGA 607814 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | | | ||| ||| ||| |||||| | ||| || | || |||||| Sbjct 607815 GATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAAGA 607874 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| ||||||| ||||| | ||||| |||| ||| || || ||||||||||| |||| Sbjct 607875 CGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCT 607934 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | | | ||||| |||| | | || || | || | | |||||| Sbjct 607935 GGTCGA----CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTA 607990 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGATGGAC 245278 || ||||| ||||| |||||| | ||| | || | || || ||| | | Sbjct 607991 GATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGG-TGC--ACGTTG 608047 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | ||| | ||||| ||| ||||||||| | || ||| |||||| ||||| ||| Sbjct 608048 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 608107 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 || || || |||||| |||||||| || || ||||| || |||| || || || Sbjct 608108 CCGTCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGT 608167 Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||| || |||||||| || || |||||| || ||||| Sbjct 608168 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 608208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338881285520