Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq23 167 6e-36
seq21 102 2e-16
>seq23
Length=2828041
Score = 167 bits (184), Expect = 6e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | |||| ||| || |||||||| || ||||||| |
Sbjct 925721 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 925662
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || |||||||| || || ||||| |||||||| ||||||||||| ||
Sbjct 925661 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 925602
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || || ||||| |||| || ||||| || |||| ||||| ||||| ||
Sbjct 925601 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 925542
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||||||||| ||||| || ||||| ||||||||||| || |||||
Sbjct 925541 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | |||||| || |||||||| | || || || |||||
Sbjct 925913 TCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAA 925854
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| || | ||||| || || || |||||||| || | || || ||
Sbjct 925853 ATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTTACATTG 925794
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||||| || || ||||| | || || ||||| ||||| |||||||||||
Sbjct 925793 TCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACA 925734
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 925733 AAGATCTGCAT 925723
>seq21
Length=3333843
Score = 102 bits (112), Expect = 2e-16
Identities = 158/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178
|||||| | | ||||| | ||||| || || |||| ||||| || |||||||
Sbjct 2203549 GAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGC 2203490
Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238
||||| ||||| ||||| ||||| ||| | | ||| ||||| | | || || |||
Sbjct 2203489 CAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTAC 2203430
Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298
| | | || ||||||| ||| ||||| ||||| || | || ||||| ||||||
Sbjct 2203429 CACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTC 2203370
Query 269299 TTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCTGGTGTAATG 269340
||||| ||||| ||| ||||||| || | | || ||||| |||
Sbjct 2203369 TTCGAGAAGCGCGTCGGCGACTACCAGAAGGCC-GGTGTCATG 2203328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653991913306
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |